A community effort to assess and improve drug sensitivity prediction algorithms. (Q30371323)

11 August 2017

A community effort to assess and improve drug sensitivity prediction algorithms. (English)

1 reference

11 August 2017

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Olli-Pekka Kallioniemi

12

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21 June 2017

21

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Krister Wennerberg

15

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John-Patrick Mpindi

11

John-Patrick Mpindi

1 reference

11 August 2017

13

Antti Honkela

1 reference

11 August 2017

Suleiman A Khan

10

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Mukesh Bansal

Mukesh Bansal

7

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Julio Saez-Rodriguez

Julio Saez-Rodriguez

20

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Tero Aittokallio

Tero Aittokallio

14

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Mehmet Gönen

Mehmet Gönen

4

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0 references

23

Gustavo Stolovitzky

1 reference

11 August 2017

22

Joe W Gray

1 reference

11 August 2017

2

Laura M Heiser

1 reference

11 August 2017

James C Costello

1

1 reference

11 August 2017

Elisabeth Georgii

3

1 reference

11 August 2017

Michael P Menden

5

1 reference

11 August 2017

Nicholas J Wang

6

1 reference

11 August 2017

Muhammad Ammad-ud-din

8

1 reference

11 August 2017

Petteri Hintsanen

9

1 reference

11 August 2017

NCI DREAM Community

16

1 reference

11 August 2017

James J Collins

17

1 reference

11 August 2017

Dan Gallahan

18

1 reference

11 August 2017

Dinah Singer

19

1 reference

11 August 2017

1 June 2014

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11 August 2017

1 reference

11 August 2017

32

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11 August 2017

12

1 reference

11 August 2017

1202-1212

1 reference

Modeling precision treatment of breast cancer

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Metrics other than potency reveal systematic variation in responses to cancer drugs.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Simultaneous identification of multiple driver pathways in cancer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Machine learning prediction of cancer cell sensitivity to drugs based on genomic and chemical properties

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Systematic analysis of challenge-driven improvements in molecular prognostic models for breast cancer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Collections of simultaneously altered genes as biomarkers of cancer cell drug response

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Genomics of Drug Sensitivity in Cancer (GDSC): a resource for therapeutic biomarker discovery in cancer cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Comprehensive molecular portraits of human breast tumours

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Oncogenic NRAS signaling differentially regulates survival and proliferation in melanoma

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Wisdom of crowds for robust gene network inference

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Widespread potential for growth-factor-driven resistance to anticancer kinase inhibitors.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

The landscape of cancer genes and mutational processes in breast cancer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Systematic identification of genomic markers of drug sensitivity in cancer cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Gene expression profiling in breast cancer: classification, prognostication, and prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Subtype and pathway specific responses to anticancer compounds in breast cancer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Genome-wide methylation analysis identifies genes specific to breast cancer hormone receptor status and risk of recurrence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Identification and functional analysis of 9p24 amplified genes in human breast cancer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Molecular signatures database (MSigDB) 3.0.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Hallmarks of Cancer: The Next Generation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Alternative expression analysis by RNA sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Regularization Paths for Generalized Linear Models via Coordinate Descent

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

International network of cancer genome projects

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

A systems analysis of the chemosensitivity of breast cancer cells to the polyamine analogue PG-11047.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Molecular profiling of breast cancer cell lines defines relevant tumor models and provides a resource for cancer gene discovery

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

The genomic landscapes of human breast and colorectal cancers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

A faster circular binary segmentation algorithm for the analysis of array CGH data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Reverse phase protein array: validation of a novel proteomic technology and utility for analysis of primary leukemia specimens and hematopoietic stem cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

The NCI60 human tumour cell line anticancer drug screen

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Gene expression profiling predicts clinical outcome of breast cancer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

KEGG: kyoto encyclopedia of genes and genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

Feasibility of a high-flux anticancer drug screen using a diverse panel of cultured human tumor cell lines

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547623

3 June 2018

1 reference

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

21 January 2018

1 reference

Crossref

Expanding the Diversity of Imaging-Based RNAi Screen Applications Using Cell Spot Microarrays

21 January 2018

1 reference

Crossref

Seeking the wisdom of crowds through challenge-based competitions in biomedical research.

21 January 2018

1 reference

Crossref

21 January 2018

Identifiers

DOI

10.1038/NBT.2877

1 reference

11 August 2017

1 reference

11 August 2017

1 reference