Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: a historical perspective. (Q30377960)

21 June 2017

Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: a historical perspective. (English)

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21 June 2017

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Torsten Schwede

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Manuel C. Peitsch

object named as

Manuel C Peitsch

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2

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author name string

Nicolas Guex

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1

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21 June 2017

1 June 2009

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21 June 2017

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21 June 2017

30 Suppl 1

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21 June 2017

S162-73

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SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

21 June 2017

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https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

SWISS-MODEL: An automated protein homology-modeling server

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Protein Modeling by E-mail

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

An evaluation of the performance of an automated procedure for comparative modelling of protein tertiary structure

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https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

MODBASE, a database of annotated comparative protein structure models and associated resources.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Hidden Markov models for detecting remote protein homologies

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Protein homology detection by HMM-HMM comparison

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

M4T: a comparative protein structure modeling server.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

High accuracy template based modeling by global optimization

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Analysis of TASSER-based CASP7 protein structure prediction results.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Template-based modeling and free modeling by I-TASSER in CASP7.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

High-resolution structure prediction and the crystallographic phase problem

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Toward high-resolution homology modeling of antibody Fv regions and application to antibody-antigen docking

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

PIGS: automatic prediction of antibody structures

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Automated server predictions in CASP7

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Assessment of CASP7 predictions for template-based modeling targets

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Protein structure homology modeling using SWISS-MODEL workspace.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The SWISS-MODEL Repository and associated resources

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https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The SWISS-MODEL Repository: new features and functionalities

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https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Automated protein modelling--the proteome in 3D.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Comparative protein structure modeling of genes and genomes

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

LiveBench-8: the large-scale, continuous assessment of automated protein structure prediction.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

EVA: Evaluation of protein structure prediction servers.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Remediation of the protein data bank archive

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The penultimate rotamer library

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Assessing protein structures with a non-local atomic interaction energy.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

QMEAN: A comprehensive scoring function for model quality assessment.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Large-scale protein modelling and integration with the SWISS-PROT and SWISS-2DPAGE databases: the example of Escherichia coli.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Large-Scale Comparative Protein Modelling

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Large-scale protein structure modeling of the Saccharomyces cerevisiae genome

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The Universal Protein Resource (UniProt)

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The Protein Model Portal

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The protein structure initiative structural genomics knowledgebase.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Integrating biological data--the Distributed Annotation System

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Protein structure computing in the genomic era.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Assessment of predictions in the model quality assessment category.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Errors in protein structures

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Protein modelling for all

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

An overview of structural genomics.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Structural genomics of microbes: an objective

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https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Protein structure modeling for structural genomics.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Growth of novel protein structural data.

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https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Structural genomics is the largest contributor of novel structural leverage

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Exploring the structure and function paradigm.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The Universal Protein Resource (UniProt) 2009

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Outcome of a workshop on applications of protein models in biomedical research

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Utility of homology models in the drug discovery process.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Discovery of a potent and selective protein kinase CK2 inhibitor by high-throughput docking

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Modeling mutations in protein structures

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Mutations in the TMPRSS3 gene are a rare cause of childhood nonsyndromic deafness in Caucasian patients

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Automatic procedure for using models of proteins in molecular replacement.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Analysis of catalytic residues in enzyme active sites.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

X-SITE: use of empirically derived atomic packing preferences to identify favourable interaction regions in the binding sites of proteins.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

A 3-D model for the CD40 ligand predicts that it is a compact trimer similar to the tumor necrosis factors

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Epitope map for a growth hormone receptor agonist monoclonal antibody, MAb 263.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Biological function and molecular mapping of M antigen in yeast phase of Histoplasma capsulatum

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Modeling the pore structure of voltage-gated sodium channels in closed, open, and fast-inactivated conformation reveals details of site 1 toxin and local anesthetic binding

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Evolution rescues folding of human immunodeficiency virus-1 envelope glycoprotein GP120 lacking a conserved disulfide bond

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

A geographic variant of the Staphylococcus aureus Panton-Valentine leukocidin toxin and the origin of community-associated methicillin-resistant S. aureus USA300.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Natural variation of potato allene oxide synthase 2 causes differential levels of jasmonates and pathogen resistance in Arabidopsis

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The plug domain of yeast Sec61p is important for efficient protein translocation, but is not essential for cell viability

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Homogenization and crystallization of histidine ammonia-lyase by exchange of a surface cysteine residue

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

About the use of protein models

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Characterization of the non-functional Fas ligand of gld mice

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

CD40Lbase: a database of CD40L gene mutations causing X-linked hyper-IgM syndrome

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

2 A crystal structure of an extracellular fragment of human CD40 ligand

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The third CAPRI assessment meeting Toronto, Canada, April 20-21, 2007.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Identification of direct residue contacts in protein-protein interaction by message passing

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

How well can the accuracy of comparative protein structure models be predicted?

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Model quality assessment using distance constraints from alignments.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Prediction of global and local model quality in CASP7 using Pcons and ProQ.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Determining the architectures of macromolecular assemblies

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

The Uppsala Electron-Density Server

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

Database resources of the National Center for Biotechnology Information

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

PRODRG: a tool for high-throughput crystallography of protein-ligand complexes

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200900140

7 January 2021

https://api.crossref.org/works/10.1002%2FELPS.200900140

1 reference

7 January 2021

Identifiers

DOI

10.1002/ELPS.200900140

1 reference

21 June 2017

1 reference

PubMed ID

19517507