Deep Sequencing Reveals Potential Antigenic Variants at Low Frequencies in Influenza A Virus-Infected Humans. (Q30383252)

15 August 2017

Deep Sequencing Reveals Potential Antigenic Variants at Low Frequencies in Influenza A Virus-Infected Humans. (English)

1 reference

15 August 2017

Influenza A Virus

1 reference

Thomas C Friedrich

9

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Edward A Belongia

8

object named as

Edward A Belongia

1 reference

15 August 2017

4

Louise H Moncla

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15 August 2017

7

Jennifer K Meece

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15 August 2017

Jorge M Dinis

1

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15 August 2017

Nicholas W Florek

2

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15 August 2017

Omolayo O Fatola

3

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15 August 2017

James P Mutschler

5

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15 August 2017

Olivia K Charlier

6

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15 August 2017

6 January 2016

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15 August 2017

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90

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15 August 2017

7

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15 August 2017

3355-3365

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nextflu: real-time tracking of seasonal influenza virus evolution in humans

15 August 2017

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Identification of amino acid substitutions supporting antigenic change of influenza A(H1N1)pdm09 viruses.

14 July 2018

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Early estimates of seasonal influenza vaccine effectiveness - United States, January 2015.

14 July 2018

1 reference

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Antibody landscapes after influenza virus infection or vaccination.

14 July 2018

1 reference

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Influenza vaccine effectiveness in the United States during 2012-2013: variable protection by age and virus type

14 July 2018

1 reference

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Identifying selection in the within-host evolution of influenza using viral sequence data

14 July 2018

1 reference

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Low 2012-13 influenza vaccine effectiveness associated with mutation in the egg-adapted H3N2 vaccine strain not antigenic drift in circulating viruses

14 July 2018

1 reference

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WHO recommendations for the viruses used in the 2013-2014 Northern Hemisphere influenza vaccine: Epidemiology, antigenic and genetic characteristics of influenza A(H1N1)pdm09, A(H3N2) and B influenza viruses collected from October 2012 to January 20

14 July 2018

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Interim estimates of 2013-14 seasonal influenza vaccine effectiveness - United States, February 2014.

14 July 2018

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Integrating influenza antigenic dynamics with molecular evolution

14 July 2018

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Influenza vaccine effectiveness in the 2011-2012 season: protection against each circulating virus and the effect of prior vaccination on estimates

14 July 2018

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Selection on haemagglutinin imposes a bottleneck during mammalian transmission of reassortant H5N1 influenza viruses

14 July 2018

1 reference

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Neutralizing antibodies against previously encountered influenza virus strains increase over time: a longitudinal analysis.

14 July 2018

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Immune history shapes specificity of pandemic H1N1 influenza antibody responses.

14 July 2018

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Antigenic drift of the pandemic 2009 A(H1N1) influenza virus in A ferret model

14 July 2018

1 reference

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The role of mutational robustness in RNA virus evolution

14 July 2018

1 reference

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Defining influenza A virus hemagglutinin antigenic drift by sequential monoclonal antibody selection

14 July 2018

1 reference

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Evolution of equine influenza virus in vaccinated horses

14 July 2018

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Presence of oseltamivir-resistant pandemic A/H1N1 minor variants before drug therapy with subsequent selection and transmission.

14 July 2018

1 reference

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A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Viral quasispecies evolution

14 July 2018

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Antibody pressure by a human monoclonal antibody targeting the 2009 pandemic H1N1 virus hemagglutinin drives the emergence of a virus with increased virulence in mice

14 July 2018

1 reference

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Performance comparison of benchtop high-throughput sequencing platforms

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Influenza research database: an integrated bioinformatics resource for influenza research and surveillance.

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Efficacy and effectiveness of influenza vaccines: a systematic review and meta-analysis

14 July 2018

1 reference

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Prevalence of epistasis in the evolution of influenza A surface proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Hemagglutinin receptor binding avidity drives influenza A virus antigenic drift

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

The global circulation of seasonal influenza A (H3N2) viruses

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Measuring disease frequency in the Marshfield Epidemiologic Study Area (MESA)

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Mapping the antigenic and genetic evolution of influenza virus

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

14 July 2018

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Mutation rates among RNA viruses

14 July 2018

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The antigenic structure of the influenza virus A/PR/8/34 hemagglutinin (H1 subtype)

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Disquisitions of Original Antigenic Sin. I. Evidence in man

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Structural changes in the haemagglutinin which accompany egg adaptation of an influenza A(H1N1) virus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Refinement of the influenza virus hemagglutinin by simulated annealing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Nucleotide sequences at the 5' termini of influenza virus RNAs and their transcripts

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Substitutions near the receptor binding site determine major antigenic change during influenza virus evolution

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Early estimates of seasonal influenza vaccine effectiveness--United States, January 2013.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Comparison of epitope structures of H3HAs through protein modeling of influenza A virus hemagglutinin: mechanism for selection of antigenic variants in the presence of a monoclonal antibody

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Evidence for host-cell selection of influenza virus antigenic variants

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4794676

Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26739054

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Extensive heterogeneity in the hemagglutinin of egg-grown influenza viruses from different patients

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26739054

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Two residues in the hemagglutinin of A/Fujian/411/02-like influenza viruses are responsible for antigenic drift from A/Panama/2007/99

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26739054

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JVI.03248-15

1 reference

15 August 2017

1 reference

15 August 2017

PubMed publication ID

26739054

1 reference