PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta (Q30384230)

10 September 2017

PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta (English)

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10 September 2017

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Jeffrey J Gray

3

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Sergey Lyskov

series ordinal

2

object named as

Sergey Lyskov

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10 September 2017

Sidhartha Chaudhury

1

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PMCID

2828115

10 September 2017

language of work or name

English

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publication date

7 January 2010

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10 September 2017

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10 September 2017

26

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10 September 2017

5

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10 September 2017

689-691

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Structure prediction for CASP8 with all-atom refinement using Rosetta.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

Biopython: freely available Python tools for computational molecular biology and bioinformatics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

Toward high-resolution homology modeling of antibody Fv regions and application to antibody-antigen docking

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

The RosettaDock server for local protein-protein docking

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

Structure prediction of domain insertion proteins from structures of individual domains.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

Improved beta-protein structure prediction by multilevel optimization of nonlocal strand pairings and local backbone conformation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

Toward high-resolution de novo structure prediction for small proteins.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

Protein structure prediction and analysis using the Robetta server.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

A simple physical model for binding energy hot spots in protein-protein complexes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

Native protein sequences are close to optimal for their structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

Three-dimensional structure of a recombinant variant of human pancreatic secretory trypsin inhibitor (Kazal type)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828115

RosettaLigand docking with full ligand and receptor flexibility.

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ007

10.1093/BIOINFORMATICS/BTQ007

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/ChaudhuryLG10

10 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

10 September 2017

1 reference

PMCID

2828115