Small-angle scattering for structural biology--expanding the frontier while avoiding the pitfalls. (Q30385150)

20 September 2017

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title

Small-angle scattering for structural biology--expanding the frontier while avoiding the pitfalls. (English)

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20 September 2017

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David A Jacques

1

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Jill Trewhella

object named as

Jill Trewhella

series ordinal

2

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publication date

1 April 2010

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20 September 2017

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20 September 2017

19

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20 September 2017

4

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20 September 2017

642-657

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X-ray structure of Pur- reveals a Whirly-like fold and an unusual nucleic-acid binding surface

20 September 2017

1 reference

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Structural analysis of lipocalin-type prostaglandin D synthase complexed with biliverdin by small-angle X-ray scattering and multi-dimensional NMR

20 June 2018

1 reference

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Structural Evaluation of Potent NKT Cell Agonists: Implications for Design of Novel Stimulatory Ligands

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Atomic Structures of Two Novel Immunoglobulin-like Domain Pairs in the Actin Cross-linking Protein Filamin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Structure and flexibility within proteins as identified through small angle X-ray scattering

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Structure of the sporulation histidine kinase inhibitor Sda from Bacillus subtilis and insights into its solution state

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Analysis of PKR structure by small-angle scattering

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

The Structure of the MAP2K MEK6 Reveals an Autoinhibitory Dimer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

How to Switch Off a Histidine Kinase: Crystal Structure of Geobacillus stearothermophilus KinB with the inhibitor Sda

20 June 2018

1 reference

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Superoxide dismutase from the eukaryotic thermophile Alvinella pompejana: structures, stability, mechanism, and insights into amyotrophic lateral sclerosis

20 June 2018

1 reference

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The histidine kinase inhibitor Sda binds near the site of autophosphorylation and may sterically hinder autophosphorylation and phosphotransfer to Spo0F

20 June 2018

1 reference

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Cardiac myosin-binding protein C decorates F-actin: implications for cardiac function.

20 June 2018

1 reference

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Histidine kinase regulation by a cyclophilin-like inhibitor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Small angle neutron and X-ray scattering in structural biology: recent examples from the literature

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Structural basis for synaptic adhesion mediated by neuroligin-neurexin interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Refined solution structure of the 82-kDa enzyme malate synthase G from joint NMR and synchrotron SAXS restraints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Synaptic arrangement of the neuroligin/beta-neurexin complex revealed by X-ray and neutron scattering

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Structural characterization of flexible proteins using small-angle X-ray scattering

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

A flexible interface between DNA ligase and PCNA supports conformational switching and efficient ligation of DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Unactivated PKR exists in an open conformation capable of binding nucleotides

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

The SAXS solution structure of RF1 differs from its crystal structure and is similar to its ribosome bound cryo-EM structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Refinement of multidomain protein structures by combination of solution small-angle X-ray scattering and NMR data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Effects of urea and trimethylamine-N-oxide (TMAO) on the interactions of lysozyme in solution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Global rigid body modeling of macromolecular complexes against small-angle scattering data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Calculation of standard atomic volumes for RNA and comparison with proteins: RNA is packed more tightly

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Structure and mechanism of action of Sda, an inhibitor of the histidine kinases that regulate initiation of sporulation in Bacillus subtilis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

ExPASy: The proteomics server for in-depth protein knowledge and analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Protein hydration in solution: experimental observation by x-ray and neutron scattering

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Crystal structure of the nucleosome core particle at 2.8 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Comparison of the crystal and solution structures of calmodulin and troponin C

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

A complete mapping of the proteins in the small ribosomal subunit of Escherichia coli.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Changes in the structure of calmodulin induced by a peptide based on the calmodulin-binding domain of myosin light chain kinase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Inter-protein distances within the large subunit from Escherichia coli ribosomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Low-angle neutron scattering from chromatin subunit particles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867006

Small-angle scattering studies of biological macromolecules in solution

20 June 2018

1 reference

PRIMUS: a Windows PC-based system for small-angle scattering data analysis

21 January 2018

1 reference

Radiation damage to a protein solution, detected by synchrotron X-ray small-angle scattering: dose-related considerations and suppression by cryoprotectants.

21 January 2018

1 reference

CRYSOL– a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates

21 January 2018

1 reference

A structure refinement protocol combining NMR residual dipolar couplings and small angle scattering restraints

21 January 2018

1 reference

DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering

21 January 2018

1 reference

Automated matching of high- and low-resolution structural models

21 January 2018

1 reference

Conformation of Polypyrimidine Tract Binding Protein in Solution

21 January 2018

1 reference

Small-angle X-ray scattering reveals the N-terminal domain organization of cardiac myosin binding protein C.

21 January 2018

1 reference

Modular structure of solubilized human apolipoprotein B-100. Low resolution model revealed by small angle neutron scattering.

21 January 2018

1 reference

MULCh: modules for the analysis of small-angle neutron contrast variation data from biomolecular assemblies

21 January 2018

1 reference

The Structure of the KinA-Sda Complex Suggests an Allosteric Mechanism of Histidine Kinase Inhibition

21 January 2018

1 reference

Small-angle neutron scattering and the errors in protein structures that arise from uncorrected background and intermolecular interactions

21 January 2018

1 reference

4Ca2+.troponin C forms dimers in solution at neutral pH that dissociate upon binding various peptides: small-angle X-ray scattering studies of peptide-induced structural changes

21 January 2018

1 reference

12 December 2020

SARS CoV main proteinase: The monomer-dimer equilibrium dissociation constant

1 reference

12 December 2020

Structure and interactions of proteins in solution studied by small-angle neutron scattering

1 reference

12 December 2020

Molecular conformation of egg-white lysozyme and bovine α-lactalbumin in solution

1 reference

12 December 2020

Identifiers

DOI

10.1002/PRO.351

1 reference

20 September 2017

1 reference

20 September 2017

1 reference

PMCID

2867006