PUDGE: a flexible, interactive server for protein structure prediction (Q30390048)

16 October 2017

PUDGE: a flexible, interactive server for protein structure prediction (English)

1 reference

protein structure prediction

16 October 2017

0 references

1

Raquel Norel

1 reference

16 October 2017

Donald Petrey

2

1 reference

16 October 2017

Barry Honig

series ordinal

3

1 reference

16 October 2017

language of work or name

English

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publication date

4 June 2010

1 reference

16 October 2017

Nucleic Acids Research

1 reference

16 October 2017

38

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16 October 2017

Web Server issue

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16 October 2017

W550-4

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Creative Commons Attribution-NonCommercial 2.5 Generic

16 October 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Chemical Entities of Biological Interest: an update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

Structural relationships among proteins with different global topologies and their implications for function annotation strategies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

Structure elucidation and preliminary assessment of hydrolase activity of PqsE, the Pseudomonas quinolone signal (PQS) response protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

ChEBI: an open bioinformatics and cheminformatics resource

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

ChEBI: a database and ontology for chemical entities of biological interest

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

A graph-theory algorithm for rapid protein side-chain prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

Extending the accuracy limits of prediction for side-chain conformations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

Protein secondary structure prediction based on position-specific scoring matrices

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

SMART, a simple modular architecture research tool: identification of signaling domains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

Comparative protein modelling by satisfaction of spatial restraints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

Recognition of errors in three-dimensional structures of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

Identification of common molecular subsequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

Basic local alignment search tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

Assessment of protein models with three-dimensional profiles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896183

On the Role of the Crystal Environment in Determining Protein Side-chain Conformations

20 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20525783

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20525783

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

On the role of structural information in remote homology detection and sequence alignment: new methods using hybrid sequence profiles

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20525783

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ475

1 reference

16 October 2017

journals/nar/NorelPH10

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 October 2017

PubMed publication ID

20525783

1 reference