Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana (Q30390999)

28 September 2017

Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana (English)

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28 September 2017

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Waltraud X Schulze

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Joachim Selbig

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Elke Weber

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Diego Mauricio Riaño Pachón

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1

object named as

Diego Mauricio Riaño-Pachón

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28 September 2017

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Jost Neigenfind

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28 September 2017

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Birgit Kersten

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28 September 2017

Wolfgang R Engelsberger

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object named as

Wolfgang R Engelsberger

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Sabrina Kleessen

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28 September 2017

Pawel Durek

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28 September 2017

language of work or name

English

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publication date

1 July 2010

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28 September 2017

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describes a project that uses

28 September 2017

Cytoscape

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Cytoscape

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9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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20 June 2018

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20 June 2018

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20 June 2018

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In silico analysis of phosphoproteome data suggests a rich-get-richer process of phosphosite accumulation over evolution

20 June 2018

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20 June 2018

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Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes

20 June 2018

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Sequencing of natural strains of Arabidopsis thaliana with short reads

20 June 2018

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20 June 2018

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Is there a code embedded in proteins that is based on post-translational modifications?

20 June 2018

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Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.

20 June 2018

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Arabidopsis MAPKs: a complex signalling network involved in multiple biological processes

20 June 2018

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Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.

20 June 2018

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Comparative conservation analysis of the human mitotic phosphoproteome

20 June 2018

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The age of crosstalk: phosphorylation, ubiquitination, and beyond

20 June 2018

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The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

20 June 2018

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Using phosphoproteomics to reveal signalling dynamics in plants

20 June 2018

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Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses

20 June 2018

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Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

20 June 2018

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Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana

20 June 2018

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Mutational activation of ErbB family receptor tyrosine kinases: insights into mechanisms of signal transduction and tumorigenesis

20 June 2018

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Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

20 June 2018

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Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

20 June 2018

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Plant phosphoproteomics: a long road ahead

20 June 2018

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Graded regulation of the Kv2.1 potassium channel by variable phosphorylation.

20 June 2018

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Charging it up: global analysis of protein phosphorylation

20 June 2018

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Reading protein modifications with interaction domains

20 June 2018

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Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism

20 June 2018

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Identification of mutations that disrupt phosphorylation-dependent nuclear export of cyclin D1.

20 June 2018

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Phosphoproteomics in Arabidopsis: moving from empirical to predictive science

20 June 2018

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Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites

20 June 2018

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Variable control of Ets-1 DNA binding by multiple phosphates in an unstructured region

20 June 2018

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20 June 2018

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The pattern of polymorphism in Arabidopsis thaliana

20 June 2018

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Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database

20 June 2018

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20 June 2018

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The protein kinase complement of the human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

20 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

The regulation of protein function by multisite phosphorylation--a 25 year update

20 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

A greedy algorithm for aligning DNA sequences

20 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Gene ontology: tool for the unification of biology

20 June 2018

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Basic local alignment search tool

20 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Conservation of protein phosphorylation sites within gene families and across species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Analysis of phosphorylation of the BRI1/BAK1 complex in arabidopsis reveals amino acid residues critical for receptor formation and activation of BR signaling

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Chemical dissection of the APC Repeat 3 multistep phosphorylation by the concerted action of protein kinases CK1 and GSK3.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Quantitative Phosphoproteomics of Early Elicitor Signaling inArabidopsis

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Reproducible isolation of distinct, overlapping segments of the phosphoproteome

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Inward rectification of the AKT2 channel abolished by voltage-dependent phosphorylation.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Systematic trans-genomic comparison of protein kinases between Arabidopsis and Saccharomyces cerevisiae

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996939

Temporal Analysis of Sucrose-induced Phosphorylation Changes in Plasma Membrane Proteins ofArabidopsis

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20594336

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Phosphopeptide enrichment by aliphatic hydroxy acid-modified metal oxide chromatography for nano-LC-MS/MS in proteomics applications

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20594336

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-11-411

1 reference

Dimensions Publication ID

28 September 2017

0 references

1 reference

28 September 2017

PubMed publication ID

20594336

1 reference