Predicting residue-residue contacts using random forest models (Q30408474)

21 June 2017

Predicting residue-residue contacts using random forest models (English)

1 reference

21 June 2017

0 references

2

Yaping Fang

1 reference

21 June 2017

Yunqi Li

1

1 reference

PubMed ID

22016406

21 June 2017

Jianwen Fang

series ordinal

3

1 reference

PubMed ID

22016406

21 June 2017

language of work or name

English

0 references

publication date

20 October 2011

1 reference

21 June 2017

1 reference

21 June 2017

27

1 reference

21 June 2017

24

1 reference

21 June 2017

3379-3384

1 reference

Basic local alignment search tool

21 June 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Can molecular dynamics simulations provide high-resolution refinement of protein structure?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Prediction of protein long-range contacts using an ensemble of genetic algorithm classifiers with sequence profile centers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Improved residue contact prediction using support vector machines and a large feature set.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

SCRATCH: a protein structure and structural feature prediction server

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Feature selection in validating mass spectrometry database search results.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

A neural network based predictor of residue contacts in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Progress in predicting inter-residue contacts of proteins with neural networks and correlated mutations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

EVAcon: a protein contact prediction evaluation service

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

A lattice model for protein structure prediction at low resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

REMO: A new protocol to refine full atomic protein models from C-alpha traces by optimizing hydrogen-bonding networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

The PSIPRED protein structure prediction server

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

SCOP: a structural classification of proteins database for the investigation of sequences and structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Improved prediction of the number of residue contacts in proteins by recurrent neural networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

PROFcon: novel prediction of long-range contacts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

SELECTpro: effective protein model selection using a structure-based energy function resistant to BLUNDERs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Prediction of protein-protein interaction sites in sequences and 3D structures by random forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

NNcon: improved protein contact map prediction using 2D-recursive neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

A two-stage approach for improved prediction of residue contact maps.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Prediction of DNA-binding residues from protein sequence information using random forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

A comprehensive assessment of sequence-based and template-based methods for protein contact prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Improving protein structure prediction using multiple sequence-based contact predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Predicting residue-residue contact maps by a two-layer, integrated neural-network method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Prediction of inter-residue contacts map based on genetic algorithm optimized radial basis function neural network and binary input encoding scheme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

I-TASSER: fully automated protein structure prediction in CASP8

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

TOUCHSTONE II: a new approach to ab initio protein structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Sequence specificity, statistical potentials, and three-dimensional structure prediction with self-correcting distance geometry calculations of beta-sheet formation in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

Striped sheets and protein contact prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR579

10.1093/BIOINFORMATICS/BTR579

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/LiFF11

21 June 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

22016406