Detection of recombination events in bacterial genomes from large population samples (Q30409108)

16 September 2017

Detection of recombination events in bacterial genomes from large population samples (English)

1 reference

16 September 2017

5

1 reference

16 September 2017

6

Stephen D Bentley

1 reference

16 September 2017

7

Jukka Corander

1 reference

16 September 2017

2

William P Hanage

1 reference

16 September 2017

3

Nicholas J Croucher

1 reference

16 September 2017

Pekka Marttinen

1

1 reference

PMCID

3245952

16 September 2017

language of work or name

English

0 references

publication date

7 November 2011

1 reference

16 September 2017

Nucleic Acids Research

1 reference

16 September 2017

40

1 reference

16 September 2017

1

1 reference

16 September 2017

e6

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

16 September 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Comparison of capsular genes of Streptococcus pneumoniae serotype 6A, 6B, 6C, and 6D isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Rapid pneumococcal evolution in response to clinical interventions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Inference of homologous recombination in bacteria using whole-genome sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Identifying currents in the gene pool for bacterial populations using an integrative approach

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Bayesian modeling of recombination events in bacterial populations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

A systematics for discovering the fundamental units of bacterial diversity

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Recombination and the nature of bacterial speciation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Inference of bacterial microevolution using multilocus sequence data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

A tutorial on statistical methods for population association studies

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Detecting recombination in evolving nucleotide sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Melioidosis: insights into the pathogenicity of Burkholderia pseudomallei

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Fuzzy species among recombinogenic bacteria

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Horizontal gene transfer in microbial genome evolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Gene transfer in bacteria: speciation without species?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Sexual isolation in bacteria

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Inference of population structure using multilocus genotype data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Analyzing the mosaic structure of genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Hyper-recombination, diversity, and antibiotic resistance in pneumococcus.

14 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR928

A likelihood method for the detection of selection and recombination using nucleotide sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR928

TOPAL 2.0: improved detection of mosaic sequences within multiple alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR928

Detecting recombination in 4-taxa DNA sequence alignments with Bayesian hidden Markov models and Markov chain Monte Carlo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR928

Dual multiple change-point model leads to more accurate recombination detection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR928

Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR928

Phylogenetic inference under recombination using Bayesian stochastic topology selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR928

Bayesian identification of admixture events using multilocus molecular markers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR928

Addressing the shortcomings of three recent Bayesian methods for detecting interspecific recombination in DNA sequence alignments.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Statistical tests for detecting gene conversion.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245952

Detecting recombination from gene trees

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22064866

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKR928

1 reference

16 September 2017

1 reference

16 September 2017

1 reference

PMCID

3245952