GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions (Q30420248)

13 August 2017

GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions (English)

1 reference

13 August 2017

3

Chaok Seok

1 reference

13 August 2017

2

Hahnbeom Park

1 reference

13 August 2017

1

Junsu Ko

1 reference

13 August 2017

10 August 2012

1 reference

13 August 2017

1 reference

13 August 2017

13

1 reference

13 August 2017

198

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-13-198

13 August 2017

0 references

cites work

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Recursive protein modeling: a divide and conquer strategy for Protein Structure Prediction and its case study in CASP9

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Refinement of unreliable local regions in template-based protein models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Assessment of template based protein structure predictions in CASP9.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Protein loop modeling by using fragment assembly and analytical loop closure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

How significant is a protein structure similarity with TM-score = 0.5?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Fast and accurate automatic structure prediction with HHpred.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Using multiple templates to improve quality of homology models in automated homology modeling.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Progress and challenges in protein structure prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

A multi-template combination algorithm for protein comparative modeling.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

PROMALS3D: a tool for multiple protein sequence and structure alignments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

I-TASSER server for protein 3D structure prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Comparative modeling in CASP6 using consensus approach to template selection, sequence-structure alignment, and structure assessment.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

TM-align: a protein structure alignment algorithm based on the TM-score

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Protein homology detection by HMM-HMM comparison

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

LGA: A method for finding 3D similarities in protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

DaliLite workbench for protein structure comparison

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Comparative protein structure modeling of genes and genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Processing and analysis of CASP3 protein structure predictions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Conformational analysis of the 20-residue membrane-bound portion of melittin by conformational space annealing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Comparative protein modelling by satisfaction of spatial restraints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3462707

Exploring the potential of template-based modelling.

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-198

LigDockCSA: protein-ligand docking using conformational space annealing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-198

Refinement of protein termini in template-based modeling using conformational space annealing

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-198

A kinematic view of loop closure

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-198

All-atom chain-building by optimizing MODELLER energy function using conformational space annealing

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22883815

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Boosting Protein Threading Accuracy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22883815

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-13-198

1 reference

13 August 2017

journals/bmcbi/KoPS12

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1014771466

0 references

Fatcat ID

release_3oop27rsgfbabml4vctmbv4xsq

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/3oop27rsgfbabml4vctmbv4xsq

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3462707

1 reference

PMC publication ID

3462707

13 August 2017

PubMed publication ID

22883815

1 reference

PMC publication ID

3462707