On how mammalian transcription factors recognize methylated DNA. (Q30426003)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23324617%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

review article

4 references

4 September 2020

19 November 2020

22 December 2020

On how mammalian transcription factors recognize methylated DNA (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23324617%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

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22 October 2019

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11 December 2019

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22 December 2019

22 December 2020

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4 September 2020

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19 November 2020

Pierre-Antoine Defossez

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23324617%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

author name string

Bethany A Buck-Koehntop

series ordinal

1

1 reference

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22 February 2020

publication date

16 January 2013

1 reference

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22 February 2020

1 February 2013

3 references

4 September 2020

19 November 2020

22 December 2020

7 references

22 October 2019

11 December 2019

22 December 2019

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23324617%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

4 September 2020

19 November 2020

22 December 2020

8

1 reference

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22 February 2020

issue

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23324617%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

page(s)

131-137

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Creative Commons Attribution-NonCommercial 3.0 Unported

22 February 2020

copyright license

6 references

22 October 2019

11 December 2019

22 December 2019

4 September 2020

19 November 2020

An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence

22 December 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Functions of DNA methylation: islands, start sites, gene bodies and beyond

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Structure-Based Mechanistic Insights into DNMT1-Mediated Maintenance DNA Methylation

20 June 2018

1 reference

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In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

A SILAC-based screen for Methyl-CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

The human proteins MBD5 and MBD6 associate with heterochromatin but they do not bind methylated DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Active DNA demethylation: many roads lead to Rome.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Sequence-specific recognition of methylated DNA by human zinc-finger proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Recruitment of MBD1 to target genes requires sequence-specific interaction of the MBD domain with methylated DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Human DNA methylomes at base resolution show widespread epigenomic differences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Many paths to one goal? The proteins that recognize methylated DNA in eukaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

A census of human transcription factors: function, expression and evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Finding the fifth base: genome-wide sequencing of cytosine methylation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Adaptive evolution in zinc finger transcription factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Structural basis for recognition of hemi-methylated DNA by the SRA domain of human UHRF1

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

DNA methylation landscapes: provocative insights from epigenomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Comprehensive high-throughput arrays for relative methylation (CHARM).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

MeCP2 binding to DNA depends upon hydration at methyl-CpG

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

UHRF1 plays a role in maintaining DNA methylation in mammalian cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Stability and flexibility of epigenetic gene regulation in mammalian development

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Genomic DNA methylation: the mark and its mediators

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Kaiso-deficient mice show resistance to intestinal cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

A family of human zinc finger proteins that bind methylated DNA and repress transcription

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

ICBP90, an E2F-1 target, recruits HDAC1 and binds to methyl-CpG through its SRA domain

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Chromatin modification and epigenetic reprogramming in mammalian development

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

The p120(ctn)-binding partner Kaiso is a bi-modal DNA-binding protein that recognizes both a sequence-specific consensus and methylated CpG dinucleotides

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

The p120 catenin partner Kaiso is a DNA methylation-dependent transcriptional repressor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Identification and characterization of a family of mammalian methyl-CpG binding proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.4161%2FEPI.23632

Engineered zinc finger proteins that respond to DNA modification by HaeIII and HhaI methyltransferase enzymes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.4161%2FEPI.23632

DNA-binding factors shape the mouse methylome at distal regulatory regions

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592898

26 November 2018

Identifiers

DOI

10.4161/EPI.23632

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23324617%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23324617%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23324617%20AND%20SRC:MED&resulttype=core&format=json