A proposal to sequence the genome of a garter snake (Thamnophis sirtalis) (Q30431916)

19 October 2017

A proposal to sequence the genome of a garter snake (Thamnophis sirtalis) (English)

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19 October 2017

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4

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19 October 2017

7

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19 October 2017

5

Michael E Pfrender

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19 October 2017

8

Wesley C Warren

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19 October 2017

Todd A Castoe

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19 October 2017

Anne M Bronikowski

series ordinal

2

1 reference

19 October 2017

Edmund D Brodie

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3

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19 October 2017

Michael D Shapiro

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6

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19 October 2017

1 April 2011

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Standards in genomic sciences

19 October 2017

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19 October 2017

4

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19 October 2017

2

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19 October 2017

257-270

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Three tiers of genome evolution in reptiles

19 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Discovery of highly divergent repeat landscapes in snake genomes using high-throughput sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

The UCSC Genome Browser database: update 2011

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

A role for host-parasite interactions in the horizontal transfer of transposons across phyla

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Transposable elements in reptilian and avian (sauropsida) genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

The sequence and de novo assembly of the giant panda genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Sense from sequence reads: methods for alignment and assembly

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

The evolutionary origins of beneficial alleles during the repeated adaptation of garter snakes to deadly prey

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Integrating evolutionary and molecular genetics of aging.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

The evolution of aging phenotypes in snakes: a review and synthesis with new data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Evidence for an ancient adaptive episode of convergent molecular evolution.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Control of segment number in vertebrate embryos

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Adaptive evolution and functional redesign of core metabolic proteins in snakes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Phenotypic mismatches reveal escape from arms-race coevolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

The energetic cost of limbless locomotion

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Evidence for different origin of sex chromosomes in snakes, birds, and mammals and step-wise differentiation of snake sex chromosomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Eukaryotic genome size databases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

The cost of reproduction: the devil in the details

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Parallel genetic origins of pelvic reduction in vertebrates

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Developmental basis for hind-limb loss in dolphins and origin of the cetacean bodyplan

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Early evolution of the venom system in lizards and snakes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Evolutionary diversification of TTX-resistant sodium channels in a predator-prey interaction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Hox10 and Hox11 genes are required to globally pattern the mammalian skeleton

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

The evolutionary response of predators to dangerous prey: hotspots and coldspots in the geographic mosaic of coevolution between garter snakes and newts.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Molecular phylogeography of common garter snakes (Thamnophis sirtalis) in western North America: implications for regional historical forces

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Mechanisms of Adaptation in a Predator-Prey Arms Race: TTX-Resistant Sodium Channels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Phylogenetic relationships of North American garter snakes (Thamnophis) based on four mitochondrial genes: how much DNA sequence is enough?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Horizontal transfer of non-LTR retrotransposons in vertebrates

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Developmental basis of limblessness and axial patterning in snakes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

A vertebrate model of extreme physiological regulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Unusual horizontal transfer of a long interspersed nuclear element between distant vertebrate classes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Genome size and GC-percent in vertebrates as determined by flow cytometry: the triangular relationship

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Bov‐B Long Interspersed Repeated DNA (LINE) Sequences are Present in Vipera Ammodytes Phospholipase A2 Genes and in Genomes of Viperidae Snakes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Adaptive responses to feeding in Burmese pythons: pay before pumping

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Hox genes and the evolution of vertebrate axial morphology.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Chemical-cue preferences of newborn snakes: influence of prenatal maternal experience.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Female mimicry in garter snakes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Pinealectomy blocks vernal courtship behavior in red-sided garter snakes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Individual correlation of morphology, muscle mechanics, and locomotion in a salamander

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Slow mortality rate accelerations during aging in some animals approximate that of humans.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Quantitative genetics of maximal oxygen consumption in a garter snake.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Development of antipredator responses in snakes: V. Species differences in ontogenetic trajectories.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

The Relationships of the Garter Snake Thamnophis ordinoides

20 June 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Molecular systematics and evolution of Regina and the thamnophiine snakes.

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Distinctiveness in the face of gene flow: hybridization between specialist and generalist gartersnakes

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Behavioural variation in natural populations. III: Antipredator displays in the garter snake Thamnophis radix

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Adaptive divergence within and between ecotypes of the terrestrial garter snake, Thamnophis elegans, assessed with F(ST)-Q(ST) comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Geographic variation in timekeeping systems among three populations of garter snakes (Thamnophis sirtalis) in a common garden

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Correlational Selection for Color Pattern and Antipredator Behavior in the Garter Snake Thamnophis ordinoides

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

The Ecological Physiology of a Garter Snake

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Hormonal independence of courtship behavior in the male garter snake

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Plasma steroid hormone levels of female red-sided garter snakes, Thamnophis sirtalis parietalis: relationship to mating and gestation

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Seasonal changes and annual variability in daily plasma melatonin in the red-sided garter snake (Thamnophis sirtalis parietalis).

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Courting and noncourting male red-sided garter snakes, Thamnophis sirtalis parietalis: plasma melatonin levels and the effects of pinealectomy.

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Low temperature dormancy affects the quantity and quality of the female sexual attractiveness pheromone in red-sided garter snakes

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Benefits of female mimicry in snakes

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Chemical-Cue Preferences of Inexperienced Snakes: Comparative Aspects

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

The evolutionary dynamics of autonomous non-LTR retrotransposons in the lizard Anolis carolinensis shows more similarity to fish than mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

The evolution of two partner LINE/SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis.

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

Unique structural characteristics and evolution of a cluster of venom phospholipase A2 isozyme genes of Protobothrops flavoviridis snake

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.1664145

An empirical test of evolutionary theories for reproductive senescence and reproductive effort in the garter snake Thamnophis elegans.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

Pinealectomy, melatonin, and courtship behavior in male red-sided garter snakes (Thamnophis sirtalis parietalis).

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111982

BEHAVIORAL VARIATION IN NATURAL POPULATIONS. I. PHENOTYPIC, GENETIC AND ENVIRONMENTAL CORRELATIONS BETWEEN CHEMORECEPTIVE RESPONSES TO PREY IN THE GARTER SNAKE, THAMNOPHIS ELEGANS

26 November 2018

1 reference

12 December 2020

SELECTION ON LOCOMOTOR PERFORMANCE CAPACITY IN A NATURAL POPULATION OF GARTER SNAKES.

1 reference

12 December 2020

HIERARCHICAL COMPARISON OF GENETIC VARIANCE-COVARIANCE MATRICES. II COASTAL-INLAND DIVERGENCE IN THE GARTER SNAKE, THAMNOPHIS ELEGANS.

1 reference

12 December 2020

HOMOGENEITY OF THE GENETIC VARIANCE-COVARIANCE MATRIX FOR ANTIPREDATOR TRAITS IN TWO NATURAL POPULATIONS OF THE GARTER SNAKE THAMNOPHIS ORDINOIDES

1 reference

12 December 2020

CORRELATIONAL SELECTION FOR COLOR PATTERN AND ANTIPREDATOR BEHAVIOR IN THE GARTER SNAKE THAMNOPHIS ORDINOIDES

1 reference

12 December 2020

Chemical access to the vomeronasal organs of garter snakes

1 reference

12 December 2020

Seasonal fluctuations in brain nuclei in the red-sided garter snake and their hormonal control

1 reference

12 December 2020

Effects of ovariectomy and estrogen replacement on attractivity and receptivity in the red-sided garter snake (Thamnophis sirtalis parietalis)

1 reference

12 December 2020

Identifiers

DOI

10.4056/SIGS.1664145

1 reference

Dimensions Publication ID

19 October 2017

0 references

0 references

1 reference

19 October 2017

PubMed publication ID

21677863

1 reference