Hybrid capture and next-generation sequencing identify viral integration sites from formalin-fixed, paraffin-embedded tissue. (Q30468102)

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28 January 2020

title

Hybrid capture and next-generation sequencing identify viral integration sites from formalin-fixed, paraffin-embedded tissue (English)

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28 January 2020

3

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28 January 2020

author name string

Eric J Duncavage

1

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28 January 2020

Vincent Magrini

2

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28 January 2020

Jon R Armstrong

4

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28 January 2020

Ryan T Demeter

5

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28 January 2020

Todd Wylie

6

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28 January 2020

Haley J Abel

7

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28 January 2020

John D Pfeifer

8

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publication date

1 May 2011

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The Journal of Molecular Diagnostics

28 January 2020

published in

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volume

13

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28 January 2020

issue

3

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28 January 2020

page(s)

325-333

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SLOPE: a quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence data

28 January 2020

cites work

1 reference

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Evaluation of oligonucleotide sequence capture arrays and comparison of next-generation sequencing platforms for use in molecular diagnostics.

20 June 2018

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Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

20 June 2018

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Genome remodelling in a basal-like breast cancer metastasis and xenograft

20 June 2018

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Genetic diagnosis by whole exome capture and massively parallel DNA sequencing

20 June 2018

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20 June 2018

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20 June 2018

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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

20 June 2018

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Recurring mutations found by sequencing an acute myeloid leukemia genome

20 June 2018

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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

20 June 2018

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High-throughput quantitative polymerase chain reaction in picoliter droplets

20 June 2018

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Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing

20 June 2018

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Merkel cell carcinoma of the skin: pathological and molecular evidence for a causative role of MCV in oncogenesis

20 June 2018

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Prevalence of Merkel cell polyomavirus in Merkel cell carcinoma

20 June 2018

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Transcriptome sequencing to detect gene fusions in cancer

20 June 2018

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T antigen mutations are a human tumor-specific signature for Merkel cell polyomavirus

20 June 2018

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

20 June 2018

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Frequent detection of Merkel cell polyomavirus in human Merkel cell carcinomas and identification of a unique deletion in the VP1 gene

20 June 2018

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Next-generation DNA sequencing methods

20 June 2018

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Clonal integration of a polyomavirus in human Merkel cell carcinoma

20 June 2018

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Immunoglobulin heavy chain gene analysis in lymphomas: a multi-center study demonstrating the heterogeneity of performance of polymerase chain reaction assays

20 June 2018

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PCR amplification of DNA from archival specimens. A methodological approach.

20 June 2018

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Modifications of human and viral deoxyribonucleic acid by formaldehyde fixation

20 June 2018

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PCR Amplification from Paraffin-Embedded Tissues: Effects of Fixative and Fixation Time

20 June 2018

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MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions

20 June 2018

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MC polyomavirus is frequently present in Merkel cell carcinoma of European patients.

26 November 2018

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26 November 2018

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26 November 2018

Identifiers

DOI

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28 January 2020

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28 January 2020

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