An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors (Q30477677)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16790051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

2 references

6 January 2020

7 April 2021

An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16790051%20AND%20SRC:MED&resulttype=core&format=json

biomedical investigative technique

25 December 2019

main subject

statistics

0 references

1 reference

19 September 2019

1 reference

6 January 2020

gene expression profiling

1 reference

7 April 2021

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16790051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Peyman Jafari

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16790051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

author name string

Francisco Azuaje

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16790051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

publication date

21 June 2006

6 references

20 June 2019

22 June 2019

19 September 2019

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16790051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

6 January 2020

7 April 2021

BMC Medical Informatics and Decision Making

6 references

20 June 2019

22 June 2019

19 September 2019

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16790051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

6 January 2020

7 April 2021

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16790051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

page(s)

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16790051%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 2.0 Generic

25 December 2019

copyright license

5 references

20 June 2019

22 June 2019

19 September 2019

6 January 2020

https://scigraph.springernature.com/pub.10.1186/1472-6947-6-27

7 April 2021

0 references

0 references

cites work

Missing value estimation for DNA microarray gene expression data by Support Vector Regression imputation and orthogonal coding scheme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

An interactive power analysis tool for microarray hypothesis testing and generation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

The influence of missing value imputation on detection of differentially expressed genes from microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

The quality of randomized trial reporting in leading medical journals since the revised CONSORT statement.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Statistical analysis of microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Sample size for FDR-control in microarray data analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

On the utility of pooling biological samples in microarray experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Sample size calculation for multiple testing in microarray data analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

The effect of normalization on microarray data analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Sample size for detecting differentially expressed genes in microarray experiments.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Using ANOVA to analyze microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Missing value estimation for DNA microarray gene expression data: local least squares imputation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Software packages for quantitative microarray-based gene expression analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Normalization of cDNA microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Evaluation of normalization methods for microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

New normalization methods for cDNA microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Open source software for the analysis of microarray data.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Determination of minimum sample size and discriminatory expression patterns in microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Statistical methods for microarray assays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Missing value estimation methods for DNA microarrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Computational analysis of microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Analysis of variance for gene expression microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Significance analysis of microarrays applied to the ionizing radiation response

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Adjusting for multiple testing--when and how?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Statistics for clinicians: 4: Basic concepts of statistical reasoning: hypothesis tests and the t-test.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Statistics in medical journals: some recent trends

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Cluster analysis and display of genome-wide expression patterns

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Statistical reviewing policies of medical journals: caveat lector?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Low power, type II errors, and other statistical problems in recent cardiovascular research.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

One and two sided tests of significance

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Statistical hypothesis testing in biology: a contradiction in terms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Statistical problems in the reporting of clinical trials. A survey of three medical journals.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

The alternative hypothesis: one-sided or two-sided?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Statistics in medical journals: Developments in the 1980s

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Statistical reviewing for medical journals.

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

Statistical power, sample size, and their reporting in randomized controlled trials

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

DNA microarrays: vital statistics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

Split-plot microarray experiments: issues of design, power and sample size

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

Practical FDR-based sample size calculations in microarray experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

False discovery rate, sensitivity and sample size for microarray studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

Sample size determination in microarray experiments for class comparison and prognostic classification

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

Sample size for identifying differentially expressed genes in microarray experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

Sample size for gene expression microarray experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

Microarray experimental design: power and sample size considerations

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

Power and sample size for DNA microarray studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

Increased power of microarray analysis by use of an algorithm based on a multivariate procedure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

The ethics of sample size: two-sided testing and one-sided thinking

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

A statistical method for flagging weak spots improves normalization and ratio estimates in microarrays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

A sharper Bonferroni procedure for multiple tests of significance

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6947-6-27

Statistical hypothesis testing--how exact are exact p-values?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1523197

Statistical design and the analysis of gene expression microarray data

26 November 2018

1 reference

12 December 2020

Statistical Inference (Part 3): Statistical Hypothesis Testing and Confidence Interval Estimation

1 reference

12 December 2020

Statistical hypothesis testing

1 reference

12 December 2020

Prediction of cancer outcome with microarrays: a multiple random validation strategy

1 reference

12 December 2020

DNA microarrays: boundless technology or bound by technology? Guidelines for studies using microarray technology

1 reference

12 December 2020

Identifiers

DOI

10.1186/1472-6947-6-27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16790051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

DBLP publication ID

journals/midm/JafariA06

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16790051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

1 reference