Thermodynamically feasible kinetic models of reaction networks (Q30479408)

13 October 2017

Thermodynamically feasible kinetic models of reaction networks (English)

1 reference

13 October 2017

Michael Ederer

1

1 reference

13 October 2017

Ernst Dieter Gilles

series ordinal

2

1 reference

13 October 2017

language of work or name

English

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publication date

5 January 2007

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13 October 2017

12

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inferred from page(s)

published in

Biophysical Journal

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13 October 2017

92

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13 October 2017

6

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13 October 2017

1846-1857

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Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

On imposing detailed balance in complex reaction mechanisms.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Thermodynamics of stoichiometric biochemical networks in living systems far from equilibrium

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

How to impose microscopic reversibility in complex reaction mechanisms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Web-based kinetic modelling using JWS Online.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Thirteen years of building constraint-based in silico models of Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Stoichiometric network theory for nonequilibrium biochemical systems

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Computational systems biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Metabolic network structure determines key aspects of functionality and regulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Genome-scale metabolic model of Helicobacter pylori 26695.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Energy balance for analysis of complex metabolic networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Cycle kinetics, steady state thermodynamics and motors-a paradigm for living matter physics.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Sensitivity, principal component and flux analysis applied to signal transduction: the case of epidermal growth factor mediated signaling.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Thermodynamic-based computational profiling of cellular regulatory control in hepatocyte metabolism

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Thermodynamic constraints for biochemical networks.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Extreme pathways and Kirchhoff's second law.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1861785

Quantification of Short Term Signaling by the Epidermal Growth Factor Receptor

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17208985

12 December 2020

inferred from PubMed ID database lookup

Calculation of standard transformed Gibbs energies and standard transformed enthalpies of biochemical reactants

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17208985

12 December 2020

inferred from PubMed ID database lookup

Ab initio prediction of thermodynamically feasible reaction directions from biochemical network stoichiometry

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17208985

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1529/BIOPHYSJ.106.094094

1 reference

release_azdkpitv4rdozgxgkl42bprllu

13 October 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/azdkpitv4rdozgxgkl42bprllu

24 November 2022

mapped directly with Wikidata item

1 reference

13 October 2017

1 reference