Base-specific spin-labeling of RNA for structure determination (Q30479589)

9 October 2017

Base-specific spin-labeling of RNA for structure determination (English)

1 reference

9 October 2017

Thomas F Prisner

4

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author name string

Nelly Piton

1

1 reference

9 October 2017

Yuguang Mu

2

1 reference

9 October 2017

Gerhard Stock

3

1 reference

9 October 2017

Olav Schiemann

5

1 reference

9 October 2017

Joachim W Engels

6

1 reference

9 October 2017

language of work or name

English

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publication date

22 April 2007

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9 October 2017

Nucleic Acids Research

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9 October 2017

35

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9 October 2017

9

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9 October 2017

3128-3143

1 reference

Preparation of 5'-silyl-2'-orthoester ribonucleosides for use in oligoribonucleotide synthesis

9 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Coordination environment of a site-bound metal ion in the hammerhead ribozyme determined by 15N and 2H ESEEM spectroscopy.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Site-directed spin labeling measurements of nanometer distances in nucleic acids using a sequence-independent nitroxide probe

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Reconstruction of the chemotaxis receptor-kinase assembly

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Synthesis of spin-labeled RNAs for long range distance measurements by peldor.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

EPR techniques for studying radical enzymes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Simulation and modeling of nucleic acid structure, dynamics and interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Application of NMR and EPR methods to the study of RNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Sensitivity enhancement in pulse EPR distance measurements.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

A PELDOR-based nanometer distance ruler for oligonucleotides

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

The archaeal sensory rhodopsin II/transducer complex: a model for transmembrane signal transfer.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Genetic control by metabolite-binding riboswitches

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

RNAi: an ever-growing puzzle

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Probing triplex formation by EPR spectroscopy using a newly synthesized spin label for oligonucleotides.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Molecular dynamics applied to nucleic acids

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Protein structure determination using long-distance constraints from double-quantum coherence ESR: study of T4 lysozyme.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Paramagnetic resonance of biological metal centers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Structure of the KcsA channel intracellular gate in the open state

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

RNA silencing as a plant immune system against viruses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Quantitative analysis of the isolated GAAA tetraloop/receptor interaction in solution: a site-directed spin labeling study

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Pulsed EPR spectroscopy: biological applications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Identifying conformational changes with site-directed spin labeling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Nucleic acids: theory and computer simulation, Y2K.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

A novel 5 displacement spin-labeling technique for electron paramagnetic resonance spectroscopy of RNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Tertiary Motifs in RNA Structure and Folding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Acetylenic nucleosides. 4. 1-beta-D-arabinofuranosyl-5-ethynylcytosine. Improved synthesis and evaluation of biochemical and antiviral properties.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Nucleosides and nucleotides. 103. 2-Alkynyladenosines: a novel class of selective adenosine A2 receptor agonists with potent antihypertensive effects

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891445

Binding of manganese(II) to a tertiary stabilized hammerhead ribozyme as studied by electron paramagnetic resonance spectroscopy

20 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM169

A distance ruler for RNA using EPR and site-directed spin labeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM169

Site-specific incorporation of nitroxide spin-labels into internal sites of the TAR RNA; structure-dependent dynamics of RNA by EPR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM169

Monitoring RNA base structure and dynamics using site-directed spin labeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM169

Nanometer Distance Measurements on RNA Using PELDOR

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM169

Measurement of large distances in biomolecules using double-quantum filtered refocused electron spin-echoes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM169

The determination of pair distance distributions by pulsed ESR using Tikhonov regularization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM169

GROMACS 3.0: a package for molecular simulation and trajectory analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM169

Application of molecular dynamics simulations to spin-labeled oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM169

Data analysis procedures for pulse ELDOR measurements of broad distance distributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM169

A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

21 January 2018

1 reference

12 December 2020

Experimental and theoretical studies of the effects of deoxyribose substitutions on the stability of the UUCG tetraloop

1 reference

12 December 2020

Simulation of the structure and dynamics of nonhelical RNA motifs

1 reference

12 December 2020

RNA oligonucleotide synthesis via 5'-silyl-2'-orthoester chemistry

1 reference

12 December 2020

RNA solvation: a molecular dynamics simulation perspective

1 reference

12 December 2020

Maximum entropy: a complement to Tikhonov regularization for determination of pair distance distributions by pulsed ESR

1 reference

12 December 2020

Determination of End-to-End Distances in a Series of TEMPO Diradicals of up to 2.8 nm Length with a New Four-Pulse Double Electron Electron Resonance Experiment

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKM169

1 reference

9 October 2017

1 reference

9 October 2017

PubMed publication ID

17452362

1 reference