Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping (Q30479841)

11 August 2017

Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping (English)

1 reference

11 August 2017

Neal Crampton

1

1 reference

11 August 2017

Masatoshi Yokokawa

2

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11 August 2017

David T F Dryden

3

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11 August 2017

J Michael Edwardson

4

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11 August 2017

Desirazu N Rao

5

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11 August 2017

Kunio Takeyasu

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11 August 2017

Shige H Yoshimura

7

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11 August 2017

Robert M Henderson

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11 August 2017

language of work or name

English

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publication date

23 July 2007

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11 August 2017

6

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Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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11 August 2017

104

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11 August 2017

12755-12760

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11 August 2017

31

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describes a project that uses

11 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1937539/fullTextXML

inferred from PubMed Central ID database lookup

cites work

A DNA-translocating Snf2 molecular motor: Saccharomyces cerevisiae Rdh54 displays processive translocation and extrudes DNA loops.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Fast-scanning atomic force microscopy reveals the ATP/ADP-dependent conformational changes of GroEL.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

When a helicase is not a helicase: dsDNA tracking by the motor protein EcoR124I.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Detection of high-affinity and sliding clamp modes for MSH2-MSH6 by single-molecule unzipping force analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Initiation of translocation by Type I restriction-modification enzymes is associated with a short DNA extrusion

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Unidirectional translocation from recognition site and a necessary interaction with DNA end for cleavage by Type III restriction enzyme

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

DNA communications by Type III restriction endonucleases--confirmation of 1D translocation over 3D looping

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Enzyme-mediated DNA looping

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Direct real-time molecular scale visualisation of the degradation of condensed DNA complexes exposed to DNase I

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Origin-specific unwinding of herpes simplex virus 1 DNA by the viral UL9 and ICP8 proteins: visualization of a specific preunwinding complex

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Making contacts on a nucleic acid polymer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

A high-speed atomic force microscope for studying biological macromolecules.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex displacement

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Direct visualization of dynamic protein-DNA interactions with a dedicated atomic force microscope

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

The herpes simplex virus type 1 origin-binding protein carries out origin specific DNA unwinding and forms stem-loop structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Action at a distance: DNA-looping and initiation of transcription

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

The DNA restriction endonuclease of Escherichia coli B. I. Studies of the DNA translocation and the ATPase activities.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

NaeI endonuclease binding to pBR322 DNA induces looping

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

"Antiparallel" DNA loop in gal repressosome visualized by atomic force microscopy

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700483104

Force and velocity measured for single molecules of RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700483104

Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700483104

Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700483104

Protection from natural killer cell-mediated lysis by HLA-G expression on target cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700483104

Calibration of atomic‐force microscope tips

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700483104

DNA: an extensible molecule.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937539

Nanometres and piconewtons: the macromolecular mechanics of kinesin

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17646654

12 December 2020

inferred from PubMed ID database lookup

DNA translocation by the restriction enzyme from E. coli K

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17646654

12 December 2020

inferred from PubMed ID database lookup

Direct observation of DNA translocation and cleavage by the EcoKI endonuclease using atomic force microscopy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17646654

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.0700483104

1 reference

11 August 2017

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11 August 2017

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