Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping (Q30480720)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

title

Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

author name string

Giuseppe Lia

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

David Bensimon

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

Jean-Francois Allemand

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

David Dunlap

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

Dale E A Lewis

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

Sankar Adhya

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

Laura Finzi

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

language of work or name

English

0 references

publication date

18 September 2003

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

number of pages

5

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

volume

100

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

issue

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

page(s)

11373-11377

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

Localization of denaturation bubbles in random DNA sequences

19 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

Magnetic tweezers: micromanipulation and force measurement at the molecular level

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

High-affinity DNA binding of HU protein from the hyperthermophile Thermotoga maritima

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

High-density microarray-mediated gene expression profiling of Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

The histone-like protein HU binds specifically to DNA recombination and repair intermediates

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

Stretched and overwound DNA forms a Pauling-like structure with exposed bases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

Homologous pairing in stretched supercoiled DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

Driving proteins off DNA using applied tension

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

Repressor induced site-specific binding of HU for transcriptional regulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

Histone-like protein HU as a specific transcriptional regulator: co-factor role in repression of gal transcription by GAL repressor.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

On the connection between inherent DNA flexure and preferred binding of hydroxymethyluracil-containing DNA by the type II DNA-binding protein TF1.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

The elasticity of a single supercoiled DNA molecule

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

DNA-binding parameters of the HU protein of Escherichia coli to cruciform DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

HU protein of Escherichia coli binds specifically to DNA that contains single-strand breaks or gaps

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

Transcription regulation by inflexibility of promoter DNA in a looped complex

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

A control element within a structural gene: The gal operon of Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

Limited co-operativity in protein-nucleic acid interactions. A thermodynamic model for the interactions of Escherichia coli single strand binding protein with single-stranded nucleic acids in the "beaded", (SSB)65 mode

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

Equilibrium binding of Escherichia coli single-strand binding protein to single-stranded nucleic acids in the (SSB)65 binding mode. Cation and anion effects and polynucleotide specificity.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208764

Gal repressosome contains an antiparallel DNA loop

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.2034851100

Reversible unfolding of single RNA molecules by mechanical force

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.2034851100

Variation in HU composition during growth of Escherichia coli: the heterodimer is required for long term survival

21 January 2018

1 reference

12 December 2020

Characterization of DNA-protein complexes by capillary electrophoresis-single molecule fluorescence correlation spectroscopy

1 reference

12 December 2020

Supercoiling facilitates lac operator-repressor-pseudooperator interactions

1 reference

12 December 2020

Influence of sequence and distance between two operators on interaction with the lac repressor

1 reference

12 December 2020

Supercoiling-dependent site-specific binding of HU to naked Mu DNA

1 reference

12 December 2020

Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity

1 reference

12 December 2020

Measurement of lactose repressor-mediated loop formation and breakdown in single DNA molecules

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.2034851100

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14500788%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

PubMed publication ID

14500788

1 reference