A combined theoretical and experimental study of the ammonia tunnel in carbamoyl phosphate synthetase (Q30490400)

9 October 2017

A combined theoretical and experimental study of the ammonia tunnel in carbamoyl phosphate synthetase (English)

1 reference

9 October 2017

5

Frank M Raushel

1 reference

9 October 2017

Yubo Fan

1

1 reference

9 October 2017

Liliya Lund

series ordinal

2

1 reference

9 October 2017

Qiang Shao

series ordinal

3

1 reference

9 October 2017

Yi-Qin Gao

series ordinal

4

1 reference

9 October 2017

language of work or name

English

0 references

publication date

1 July 2009

1 reference

Journal of the American Chemical Society

9 October 2017

1 reference

9 October 2017

131

1 reference

9 October 2017

29

1 reference

9 October 2017

10211-10219

1 reference

Regulation of active site coupling in glutamine-dependent NAD(+) synthetase

9 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Tunneling of intermediates in enzyme-catalyzed reactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Perforation of the tunnel wall in carbamoyl phosphate synthetase derails the passage of ammonia between sequential active sites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Development and testing of a general amber force field

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Enzymes with molecular tunnels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

SWISS-MODEL: An automated protein homology-modeling server

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Structural studies on the synchronization of catalytic centers in glutamate synthase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Structural evidence for ammonia tunneling across the (beta alpha)(8) barrel of the imidazole glycerol phosphate synthase bienzyme complex

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Channeling of ammonia in glucosamine-6-phosphate synthase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Three-dimensional structure of Escherichia coli asparagine synthetase B: a short journey from substrate to product

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

The structure of carbamoyl phosphate synthetase determined to 2.1 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Density-functional exchange-energy approximation with correct asymptotic behavior

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Coupled formation of an amidotransferase interdomain ammonia channel and a phosphoribosyltransferase active site

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Structure of carbamoyl phosphate synthetase: a journey of 96 A from substrate to product

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Role of conserved residues within the carboxy phosphate domain of carbamoyl phosphate synthetase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

DNA sequence of the carA gene and the control region of carAB: tandem promoters, respectively controlled by arginine and the pyrimidines, regulate the synthesis of carbamoyl-phosphate synthetase in Escherichia coli K-12.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Physiology and genetics of carbamoylphosphate synthesis in Escherichia coli K12.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Role of the four conserved histidine residues in the amidotransferase domain of carbamoyl phosphate synthetase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Determination of rate-limiting steps of Escherichia coli carbamoyl-phosphate synthase. Rapid quench and isotope partitioning experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Kinetic mechanism of Escherichia coli carbamoyl-phosphate synthetase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Binding of allosteric effectors to carbamyl-phosphate synthetase from Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Mechanism for the transport of ammonia within carbamoyl phosphate synthetase determined by molecular dynamics simulations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Detailed mechanism for AmtB conducting NH4+/NH3: molecular dynamics simulations.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Glutamine binding opens the ammonia channel and activates glucosamine-6P synthase

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Structural basis for tRNA-dependent amidotransferase function.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Development of polyphosphate parameters for use with the AMBER force field.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

A molecular wedge for triggering the amidotransferase activity of carbamoyl phosphate synthetase.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Glutamine-dependent NAD+Synthetase

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748306

Synchronization of the three reaction centers within carbamoyl phosphate synthetase

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19569682

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Regulation and mutation affecting a glutamine dependent formation of carbamyl phosphate in Escherichia coli

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19569682

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Control of Escherichia coli Carbamyl Phosphate Synthetase by Purine and Pyrimidine Nucleotides*

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19569682

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/JA902557R

1 reference

9 October 2017

1 reference

9 October 2017

PubMed publication ID

19569682

1 reference