Nicotiana attenuata Data Hub (NaDH): an integrative platform for exploring genomic, transcriptomic and metabolomic data in wild tobacco (Q30490696)

21 August 2017

Nicotiana attenuata Data Hub (NaDH): an integrative platform for exploring genomic, transcriptomic and metabolomic data in wild tobacco (English)

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21 August 2017

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Nicotiana attenuata

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6

Shuqing Xu

1 reference

21 August 2017

Thomas Brockmöller

1

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Ian T. Baldwin

object named as

Ian T Baldwin

series ordinal

5

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Emmanuel Gaquerel

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4

object named as

Emmanuel Gaquerel

1 reference

21 August 2017

Zhihao Ling

2

1 reference

21 August 2017

Dapeng Li

series ordinal

3

1 reference

21 August 2017

language of work or name

English

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publication date

13 January 2017

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21 August 2017

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21 August 2017

18

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21 August 2017

1

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21 August 2017

79

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describes a project that uses

21 August 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Illuminating a plant's tissue-specific metabolic diversity using computational metabolomics and information theory

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Navigating natural variation in herbivory-induced secondary metabolism in coyote tobacco populations using MS/MS structural analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Jasmonoyl-L-isoleucine coordinates metabolic networks required for anthesis and floral attractant emission in wild tobacco (Nicotiana attenuata).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Draft genome sequence of eggplant (Solanum melongena L.): the representative solanum species indigenous to the old world

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Revealing insect herbivory-induced phenolamide metabolism: from single genes to metabolic network plasticity analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

The roots of plant defenses: integrative multivariate analyses uncover dynamic behaviors of gene and metabolic networks of roots elicited by leaf herbivory

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Up in smoke: I. Smoke-derived germination cues for postfire annual,Nicotiana attenuata torr. Ex. Watson.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

The HERBIVORE ELICITOR-REGULATED1 gene enhances abscisic acid levels and defenses against herbivores in Nicotiana attenuata plants.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Data integration through proximity-based networks provides biological principles of organization across scales

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

NaMYC2 transcription factor regulates a subset of plant defense responses in Nicotiana attenuata

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Herbivory-induced volatiles function as defenses increasing fitness of the native plant Nicotiana attenuata in nature

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Alternative oxidase in resistance to biotic stresses: Nicotiana attenuata AOX contributes to resistance to a pathogen and a piercing-sucking insect but not Manduca sexta larvae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

The tomato genome sequence provides insights into fleshy fruit evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Regulation of seed germination and seedling growth by chemical signals from burning vegetation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Tissue specific diurnal rhythms of metabolites and their regulation during herbivore attack in a native tobacco, Nicotiana attenuata

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Genome sequence and analysis of the tuber crop potato

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

The genome of the cucumber, Cucumis sativus L

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

An ecologically motivated analysis of plant-herbivore interactions in native tobacco

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5237228

NOTUNG: a program for dating gene duplications and optimizing gene family trees

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3465-9

A hybrid micro-macroevolutionary approach to gene tree reconstruction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3465-9

Application of the Gini correlation coefficient to infer regulatory relationships in transcriptome analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3465-9

Gene-sharing networks reveal organizing principles of transcriptomes in Arabidopsis and other multicellular organisms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3465-9

Deciphering herbivory-induced gene-to-metabolite dynamics in Nicotiana attenuata tissues using a multifactorial approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3465-9

Genomic signatures of specialized metabolism in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3465-9

MYB8 controls inducible phenolamide levels by activating three novel hydroxycinnamoyl-coenzyme A:polyamine transferases in Nicotiana attenuata.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3465-9

Zoogeographical Studies on the Soleoid Fishes Found in Japan and its Neighhouring Regions-II

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3465-9

Computational annotation of plant metabolomics profiles via a novel network-assisted approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3465-9

10.1186/S12864-016-3465-9

21 January 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

21 August 2017

0 references

1 reference

21 August 2017

PubMed publication ID

28086860

1 reference