Inferring Drosophila gap gene regulatory network: a parameter sensitivity and perturbation analysis (Q30490935)

13 October 2017

Inferring Drosophila gap gene regulatory network: a parameter sensitivity and perturbation analysis (English)

1 reference

13 October 2017

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3

Jaap A Kaandorp

1 reference

13 October 2017

Yves Fomekong-Nanfack

series ordinal

1

1 reference

PMCID

2761871

13 October 2017

Marten Postma

series ordinal

2

1 reference

13 October 2017

21 September 2009

1 reference

13 October 2017

1 reference

13 October 2017

3

1 reference

13 October 2017

94

1 reference

https://scigraph.springernature.com/pub.10.1186/1752-0509-3-94

13 October 2017

0 references

cites work

Inferring Drosophila gap gene regulatory network: pattern analysis of simulated gene expression profiles and stability analysis

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Canalization of gene expression in the Drosophila blastoderm by gap gene cross regulation

20 June 2018

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Systems biology: parameter estimation for biochemical models

20 June 2018

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Parameter estimation and determinability analysis applied to Drosophila gap gene circuits

20 June 2018

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Stability analysis of genetic regulatory network with additive noises.

20 June 2018

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Robustness of embryonic spatial patterning in Drosophila melanogaster.

20 June 2018

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Master equation simulation analysis of immunostained Bicoid morphogen gradient

20 June 2018

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Robustness and evolvability: a paradox resolved

20 June 2018

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Universally sloppy parameter sensitivities in systems biology models

20 June 2018

1 reference

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Towards a theory of biological robustness

20 June 2018

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Indeterminacy of reverse engineering of Gene Regulatory Networks: the curse of gene elasticity

20 June 2018

1 reference

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Multiobjective optimization in bioinformatics and computational biology

20 June 2018

1 reference

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Quantitative models of developmental pattern formation

20 June 2018

1 reference

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Optimization of a stochastically simulated gene network model via simulated annealing.

20 June 2018

1 reference

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Reverse engineering the gap gene network of Drosophila melanogaster

20 June 2018

1 reference

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Diffusion and scaling during early embryonic pattern formation

20 June 2018

1 reference

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Shake it, don't break it: positive feedback and the evolution of oscillator design

20 June 2018

1 reference

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Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli

20 June 2018

1 reference

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From molecular networks to qualitative cell behavior

20 June 2018

1 reference

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Engineering gene networks to emulate Drosophila embryonic pattern formation

20 June 2018

1 reference

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Optimizing genetic circuits by global sensitivity analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Robustness of cellular functions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Robustness properties of circadian clock architectures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

A database for management of gene expression data in situ

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Parameter estimation in biochemical pathways: a comparison of global optimization methods

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Noise in eukaryotic gene expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Control, exploitation and tolerance of intracellular noise

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Looking beyond the details: a rise in system-oriented approaches in genetics and molecular biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Combinatorial synthesis of genetic networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Modeling a hox gene network in silico using a stochastic simulation algorithm

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Modeling and simulation of genetic regulatory systems: a literature review

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Complexity and robustness

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Intrinsic noise in gene regulatory networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

20 June 2018

A power law for cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

The segment polarity network is a robust developmental module

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Molecular bases for circadian clocks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Robustness in simple biochemical networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

From gradients to stripes in Drosophila embryogenesis: filling in the gaps

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Is morphogenesis an intrinsically robust process?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Mechanism of eve stripe formation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

The molecular genetics of embryonic pattern formation in Drosophila

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

The molecular basis for metameric pattern in the Drosophila embryo

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Two gap genes mediate maternal terminal pattern information in Drosophila

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Control of the initiation of homeotic gene expression by the gap genes giant and tailless in Drosophila.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Control and function of terminal gap gene activity in the posterior pole region of the Drosophila embryo

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

A connectionist model of development

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

The origin of pattern and polarity in the Drosophila embryo

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Interactions of the Drosophila gap gene giant with maternal and zygotic pattern-forming genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

The giant gene of Drosophila encodes a b-ZIP DNA-binding protein that regulates the expression of other segmentation gap genes.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Stochastic modelling for quantitative description of heterogeneous biological systems.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

[A model with asymptotically stable dynamics for the network of Drosophila gap genes].

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Inference of biochemical network models in S-system using multiobjective optimization approach.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Efficient parameter estimation for spatio-temporal models of pattern formation: case study of Drosophila melanogaster.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Linking data to models: data regression

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Modeling segmental patterning in Drosophila: Maternal and gap genes.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

A hybrid approach for efficient and robust parameter estimation in biochemical pathways.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Dynamic control of positional information in the early Drosophila embryo.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

A self-organizing system of repressor gradients establishes segmental complexity in Drosophila.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

A logical analysis of the Drosophila gap-gene system.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Registration of the expression patterns of Drosophila segmentation genes by two independent methods.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Gradients that organize embryo development.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Regulation of the Drosophila segmentation gene hunchback by two maternal morphogenetic centres

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761871

Studies of nuclear and cytoplasmic behaviour during the five mitotic cycles that precede gastrulation in Drosophila embryogenesis

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19769791

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Prediction of mutant expression patterns using gene circuits

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19769791

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The molecular basis for metameric pattern in the Drosophila embryo

1 reference

19 October 2022

https://opencitations.net/index/coci/api/v1/citations/10.1242/DEV.101.1.1

Identifiers

DOI

10.1186/1752-0509-3-94

1 reference

journals/bmcsb/Fomekong-NanfackPK09

13 October 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

13 October 2017

1 reference

PMCID

2761871