A global view of the nonprotein-coding transcriptome in Plasmodium falciparum (Q30492888)

9 October 2017

A global view of the nonprotein-coding transcriptome in Plasmodium falciparum (English)

1 reference

9 October 2017

Plasmodium falciparum

0 references

0 references

12

Michael Lanzer

1 reference

9 October 2017

Carsten A Raabe

1

1 reference

9 October 2017

Cecilia P Sanchez

2

1 reference

9 October 2017

Gerrit Randau

3

1 reference

9 October 2017

Thomas Robeck

4

1 reference

9 October 2017

Boris V Skryabin

5

1 reference

9 October 2017

Suresh V Chinni

6

1 reference

9 October 2017

Michael Kube

7

1 reference

9 October 2017

Richard Reinhardt

8

1 reference

9 October 2017

Guey Hooi Ng

9

1 reference

9 October 2017

Ravichandran Manickam

10

1 reference

9 October 2017

Vladimir Y Kuryshev

11

1 reference

9 October 2017

Juergen Brosius

13

1 reference

9 October 2017

Thean Hock Tang

14

1 reference

9 October 2017

Timofey S Rozhdestvensky

15

1 reference

9 October 2017

language of work or name

English

0 references

publication date

28 October 2009

1 reference

9 October 2017

Nucleic Acids Research

1 reference

9 October 2017

38

1 reference

9 October 2017

2

1 reference

9 October 2017

608-617

1 reference

Molecular genetics and comparative genomics reveal RNAi is not functional in malaria parasites

9 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Small RNAs in transcriptional gene silencing and genome defence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Antigenic variation in Giardia lamblia is regulated by RNA interference

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Antisense transcription: a critical look in both directions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Antigenic variation in Plasmodium falciparum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Synergistic upregulation of erythropoietin receptor (EPO-R) expression by sense and antisense EPO-R transcripts in the canine lung

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Developmentally regulated transcription of mammalian telomeres by DNA-dependent RNA polymerase II.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Antigenic variation in Plasmodium falciparum: gene organization and regulation of the var multigene family

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Regulatory mechanisms employed by cis-encoded antisense RNAs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

K-turn motifs in spatial RNA coding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Natural antisense transcripts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Activation, silencing and mutually exclusive expression within the var gene family of Plasmodium falciparum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Small non-coding RNAs and genomic imprinting

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Transcriptome analysis of antigenic variation in Plasmodium falciparum--var silencing is not dependent on antisense RNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Natural antisense transcripts: sound or silence?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Waste not, want not--transcript excess in multicellular eukaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Telomeric heterochromatin propagation and histone acetylation control mutually exclusive expression of antigenic variation genes in malaria parasites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Sub-grouping of Plasmodium falciparum 3D7 var genes based on sequence analysis of coding and non-coding regions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Cotranscriptionally Formed DNA:RNA Hybrids Mediate Transcription Elongation Impairment and Transcription-Associated Recombination

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Genome sequence of the human malaria parasite Plasmodium falciparum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Transcriptional collision between convergent genes in budding yeast.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Serial analysis of gene expression in Plasmodium falciparum reveals the global expression profile of erythrocytic stages and the presence of anti-sense transcripts in the malarial parasite

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Biology of Giardia lamblia

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Mitochondrial genome diversity in parasites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum have short A tails

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Identification of additional rRNA fragments encoded by the Plasmodium falciparum 6 kb element

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Neural BC1 RNA: cDNA clones reveal nonrepetitive sequence content

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Gene expression from the c-erbA alpha/Rev-ErbA alpha genomic locus. Potential regulation of alternative splicing by opposite strand transcription.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Post-transcriptional events are responsible for low expression of myelin basic protein in myelin deficient mice: role of natural antisense RNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Homologies between the contiguous and fragmented rRNAs of the two Plasmodium falciparum extrachromosomal DNAs are limited to core sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Virulence and drug resistance in malaria parasites

20 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP895

Transcriptional scaffolds for heterochromatin assembly.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP895

Nuclear non-coding RNAs are transcribed from the centromeres of Plasmodium falciparum and are associated with centromeric chromatin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP895

Characterisation of a repetitive DNA sequence from the malaria parasite, Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP895

Telomeric RNA enters the game.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP895

Heterochromatin silencing and locus repositioning linked to regulation of virulence genes in Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP895

Frequent ectopic recombination of virulence factor genes in telomeric chromosome clusters of P. falciparum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP895

Var gene diversity in Plasmodium falciparum is generated by frequent recombination events.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP895

RNA polymerase II synthesizes antisense RNA in Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP895

Widespread distribution of antisense transcripts in the Plasmodium falciparum genome

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811010

Genome-wide analysis of coordinate expression and evolution of human cis-encoded sense-antisense transcripts

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19864253

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genomic organisation and chromatin structure of Plasmodium falciparum chromosome ends

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19864253

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP895

1 reference

9 October 2017

1 reference

9 October 2017

1 reference