Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II. (Q30495970)

19 October 2017

Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II. (English)

1 reference

19 October 2017

6

Irina Artsimovitch

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author name string

Olga I Kulaeva

1

1 reference

19 October 2017

Daria A Gaykalova

2

1 reference

19 October 2017

Nikolai A Pestov

3

1 reference

19 October 2017

Viktor V Golovastov

4

1 reference

19 October 2017

Dmitry G Vassylyev

5

1 reference

19 October 2017

Vasily M Studitsky

7

1 reference

19 October 2017

22 November 2009

1 reference

Nature Structural & Molecular Biology

19 October 2017

1 reference

19 October 2017

16

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19 October 2017

12

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19 October 2017

1272-1278

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Using DNA mechanics to predict in vitro nucleosome positions and formation energies.

19 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Nucleosome organization in the Drosophila genome.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

The carboxy-terminal coiled-coil of the RNA polymerase β′-subunit is the main binding site for Gre factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

A chromatin landmark and transcription initiation at most promoters in human cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Chromatin modifications and their function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Transcription through chromatin by RNA polymerase II: histone displacement and exchange

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Histone dynamics during transcription: exchange of H2A/H2B dimers and H3/H4 tetramers during pol II elongation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

More than 40,000 transcripts, including novel and noncoding transcripts, in mouse embryonic stem cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Nucleolin is a histone chaperone with FACT-like activity and assists remodeling of nucleosomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

A high-resolution map of transcription in the yeast genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Variant histone H3.3 is deposited at sites of nucleosomal displacement throughout transcribed genes while active histone modifications show a promoter-proximal bias

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Transcriptional activation triggers deposition and removal of the histone variant H3.3.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Replication-independent core histone dynamics at transcriptionally active loci in vivo

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

FACT facilitates transcription-dependent nucleosome alteration

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Defects in SPT16 or POB3 (yFACT) in Saccharomyces cerevisiae cause dependence on the Hir/Hpc pathway: polymerase passage may degrade chromatin structure.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Transcriptional activation domains of human heat shock factor 1 recruit human SWI/SNF

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Preparation and analysis of positioned nucleosomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Crystal structure of the nucleosome core particle at 2.8 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

What happens to nucleosomes during transcription?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919570

Evidence for nucleosome depletion at active regulatory regions genome-wide

20 June 2018

1 reference

Dynamics of Replication-Independent Histone Turnover in Budding Yeast

21 January 2018

1 reference

Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

21 January 2018

1 reference

High-resolution dynamic mapping of histone-DNA interactions in a nucleosome

21 January 2018

1 reference

Nucleosomal locations of dominant DNA sequence motifs for histone-DNA interactions and nucleosome positioning.

21 January 2018

1 reference

Bacterial polymerase and yeast polymerase II use similar mechanisms for transcription through nucleosomes.

21 January 2018

1 reference

Transcript cleavage factors from E. coli.

21 January 2018

1 reference

RNA polymerase switches between inactivated and activated states By translocating back and forth along the DNA and the RNA.

21 January 2018

1 reference

Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication

21 January 2018

1 reference

Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II

31 March 2020

1 reference

A histone octamer can step around a transcribing polymerase without leaving the template

31 March 2020

1 reference

Overcoming a nucleosomal barrier to transcription

31 March 2020

1 reference

Mechanism of transcription through the nucleosome by eukaryotic RNA polymerase

31 March 2020

1 reference

The nature of the nucleosomal barrier to transcription: direct observation of paused intermediates by electron cryomicroscopy

31 March 2020

1 reference

Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS

31 March 2020

1 reference

Restriction enzymes as probes of nucleosome stability and dynamics

31 March 2020

1 reference

Co-overexpression of Escherichia coli RNA polymerase subunits allows isolation and analysis of mutant enzymes lacking lineage-specific sequence insertions

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NSMB.1689

1 reference

19 October 2017

1 reference

19 October 2017

1 reference