Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans (Q30500823)

15 October 2017

Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans (English)

1 reference

putative alpha-glucosidase (maltase)

15 October 2017

0 references

acetamidase

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Wide-domain GATA-type transcription factor

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citrate synthase, mitochondrial

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Putative NADPH-dependent glycerol dehydrogenase with a predicted role in carbohydrate metabolism

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Carbon catabolite repressor A

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2-methylcitrate synthase

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Malate synthase

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Low-to-moderate capacity, broad specificity purine permease

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Putative FAD dependent glycerol 3-phosphate dehydrogenase with a predicted role in glycerol metabolism

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carnitine acetyltransferase, putative

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alpha-1,4-glucosidase

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Zn(II)2Cys6 transcription factor

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Aldehyde dehydrogenase

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Putative glycerone kinase with a predicted role in glycerol metabolism

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Fructosyl amine:oxygen oxidoreductase, putative

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GPR1/FUN34/YaaH family member

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Protein of unknown function, transcriptionally regulated by AlcR

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alcohol dehydrogenase

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Regulatory protein alcR

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Gluconolactonase, putative

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Putative alpha-1,4-glucosidase

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Transmembrane histidine kinase, part of a two-component signal transducer involved in the HOG signaling pathway that regulates osmotic stress response' transcript upregulated by growth in glycerol

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Has domain(s) with predicted transferase activity, transferring glycosyl groups activity and membrane localization

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Fungal Zn(2)-Cys(6) binuclear cluster domain-containing protein

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alpha-glucosidase, putative

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ATP-citrate synthase, putative

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ATP-citrate synthase, putative

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glucose-6-phosphate 1-dehydrogenase

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isocitrate lyase, putative

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Putative acetyl-CoA synthase

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glycerol kinase

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D-arabinose 1-dehydrogenase, putative

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Aspergillus nidulans

object named as

Aspergillus nidulans

1 reference

5

1 reference

24 June 2017

Ana Paula Oliveira

3

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author name string

Helga David

series ordinal

1

1 reference

15 October 2017

Gerald Hofmann

series ordinal

2

1 reference

15 October 2017

Hanne Jarmer

series ordinal

4

1 reference

15 October 2017

1 January 2006

1 reference

15 October 2017

1 reference

15 October 2017

7

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15 October 2017

11

1 reference

15 October 2017

R108

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2006-7-11-r108

15 October 2017

0 references

cites work

Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Genome sequencing and analysis of Aspergillus oryzae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

From genomes to in silico cells via metabolic networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Modeling hybridoma cell metabolism using a generic genome-scale metabolic model of Mus musculus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Aspergillus nidulans HOG pathway is activated only by two-component signalling pathway in response to osmotic stress

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Transcriptome analysis of recombinant protein secretion by Aspergillus nidulans and the unfolded-protein response in vivo

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Uncovering transcriptional regulation of metabolism by using metabolic network topology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Use of expressed sequence tag analysis and cDNA microarrays of the filamentous fungus Aspergillus nidulans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Compatible solutes protect against chaotrope (ethanol)-induced, nonosmotic water stress

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Reconstruction of the central carbon metabolism of Aspergillus niger

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

A high performance test of differential gene expression for oligonucleotide arrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Glycerol dehydrogenase, encoded by gldB is essential for osmotolerance in Aspergillus nidulans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Identification of genes differentially expressed during aflatoxin biosynthesis in Aspergillus flavus and Aspergillus parasiticus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Missing genes in metabolic pathways: a comparative genomics approach

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

A new non-linear normalization method for reducing variability in DNA microarray experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

The distinctiveness of ATP:citrate lyase from Aspergillus nidulans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Elucidation of the metabolic fate of glucose in the filamentous fungus Trichoderma reesei using expressed sequence tag (EST) analysis and cDNA microarrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Ethanol catabolism in Aspergillus nidulans: a model system for studying gene regulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Trehalose is required for the acquisition of tolerance to a variety of stresses in the filamentous fungus Aspergillus nidulans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Regulation of the aldehyde dehydrogenase gene (aldA) and its role in the control of the coinducer level necessary for induction of the ethanol utilization pathway in Aspergillus nidulans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

The facC gene of Aspergillus nidulans encodes an acetate-inducible carnitine acetyltransferase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

FacB, the Aspergillus nidulans activator of acetate utilization genes, binds dissimilar DNA sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Exploring the metabolic and genetic control of gene expression on a genomic scale

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Carbon repression in Aspergilli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Molecular characterization of the Aspergillus nidulans treA gene encoding an acid trehalase required for growth on trehalose.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

The orlA gene from Aspergillus nidulans encodes a trehalose-6-phosphate phosphatase necessary for normal growth and chitin synthesis at elevated temperatures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Nitrogen metabolite repression in Aspergillus nidulans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Osmotic adjustment in the filamentous fungus Aspergillus nidulans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

A systems biology approach to study glucose repression in the yeast Saccharomyces cerevisiae.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Transcriptional analysis of genes for energy catabolism and hydrolytic enzymes in the filamentous fungus Aspergillus oryzae using cDNA microarrays and expressed sequence tags

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

The Aspergillus nidulans metR gene encodes a bZIP protein which activates transcription of sulphur metabolism genes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Isomaltose formed by alpha-glucosidases triggers amylase induction in Aspergillus nidulans

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Physiological characterisation of recombinant Aspergillus nidulans strains with different creA genotypes expressing A. oryzae alpha-amylase

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Characterization of the amyR gene encoding a transcriptional activator for the amylase genes in Aspergillus nidulans

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Neutral trehalases catalyse intracellular trehalose breakdown in the filamentous fungi Aspergillus nidulans and Neurospora crassa.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Specific binding sites in the alcR and alcA promoters of the ethanol regulon for the CREA repressor mediating carbon catabolite repression in Aspergillus nidulans.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Genetic and molecular characterization of a gene encoding a wide specificity purine permease of Aspergillus nidulans reveals a novel family of transporters conserved in prokaryotes and eukaryotes.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1794588

Methylcitrate synthase from Aspergillus nidulans: implications for propionate as an antifungal agent

26 November 2018

1 reference

12 December 2020

In vivo and in vitro analyses of the AmyR binding site of the Aspergillus nidulans agdA promoter; requirement of the CGG direct repeat for induction and high affinity binding of AmyR

1 reference

12 December 2020

Osmotic stress-coupled maintenance of polar growth in Aspergillus nidulans

1 reference

12 December 2020

The regulation of phosphoenolpyruvate carboxykinase and the NADP-linked malic enzyme in Aspergillus nidulans

1 reference

12 December 2020

NADPH generation in Aspergillus nidulans: is the mannitol cycle involved?

1 reference

12 December 2020

Glycerol catabolism in Aspergillus nidulans

1 reference

12 December 2020

A newly identified gene cluster in Aspergillus nidulans comprises five novel genes localized in the alc region that are controlled both by the specific transactivator AlcR and the general carbon-catabolite repressor CreA

1 reference

12 December 2020

Malic enzyme: a lipogenic enzyme in fungi

1 reference

12 December 2020

The function of CreA, the carbon catabolite repressor of Aspergillus nidulans, is regulated at the transcriptional and post-transcriptional level

1 reference

12 December 2020

Catalase activity is necessary for heat-shock recovery in Aspergillus nidulans germlings

1 reference

12 December 2020

10.1186/GB-2006-7-11-R108

Identifiers

DOI

1 reference

Dimensions Publication ID

15 October 2017

0 references

1 reference

15 October 2017

1 reference