RCrane: semi-automated RNA model building (Q30524008)

12 August 2017

RCrane: semi-automated RNA model building (English)

1 reference

12 August 2017

0 references

Kevin S Keating

1

1 reference

PMC publication ID

3413212

12 August 2017

Anna Marie Pyle

series ordinal

2

1 reference

12 August 2017

17 July 2012

1 reference

Acta Crystallographica Section D: Biological Crystallography

12 August 2017

1 reference

12 August 2017

68

1 reference

12 August 2017

Pt 8

1 reference

12 August 2017

985-995

1 reference

REFMAC5 for the refinement of macromolecular crystal structures

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Semiautomated model building for RNA crystallography using a directed rotameric approach

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Features and development of Coot

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

MolProbity: all-atom structure validation for macromolecular crystallography

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Tertiary architecture of the Oceanobacillus iheyensis group II intron

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Structural insight into nascent polypeptide chain-mediated translational stalling.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Crystal structure of the lysine riboswitch regulatory mRNA element

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Crystal Structure of a Self-Spliced Group II Intron

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Evaluating and learning from RNA pseudotorsional space: quantitative validation of a reduced representation for RNA structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

FR3D: finding local and composite recurrent structural motifs in RNA 3D structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Structure of the 70S ribosome complexed with mRNA and tRNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

The Buccaneer software for automated model building. 1. Tracing protein chains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Automated main-chain model building by template matching and iterative fragment extension

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

The penultimate rotamer library

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413212

Predicting RNA folding thermodynamics with a reduced chain representation model.

20 June 2018

1 reference

https://api.crossref.org/works/10.1107%2FS0907444912018549

Geometric properties of nucleic acids with potential for autobuilding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS0907444912018549

The GANC tetraloop: a novel motif in the group IIC intron structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS0907444912018549

RNABC: forward kinematics to reduce all-atom steric clashes in RNA backbone

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS0907444912018549

Pattern-recognition-based detection of planar objects in three-dimensional electron-density maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS0907444912018549

10.1107/S0907444912018549

21 January 2018

Identifiers

DOI

1 reference

12 August 2017

1 reference

PMC publication ID

3413212

12 August 2017

PubMed publication ID

22868764

1 reference

PMC publication ID

3413212