Bacterial DNA sifted from the Trichoplax adhaerens (Animalia: Placozoa) genome project reveals a putative rickettsial endosymbiont (Q30539440)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23475938%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

title

Bacterial DNA sifted from the Trichoplax adhaerens (Animalia: Placozoa) genome project reveals a putative rickettsial endosymbiont (English)

1 reference

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25 February 2020

0 references

0 references

1

1 reference

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25 February 2020

author name string

Joseph J Gillespie

2

1 reference

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25 February 2020

Eric K Nordberg

3

1 reference

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25 February 2020

Abdu F Azad

4

1 reference

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25 February 2020

Bruno W Sobral

5

1 reference

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25 February 2020

publication date

1 January 2013

1 reference

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Genome Biology and Evolution

25 February 2020

published in

1 reference

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25 February 2020

volume

5

1 reference

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25 February 2020

issue

4

1 reference

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25 February 2020

page(s)

621-645

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"Candidatus Midichloriaceae" fam. nov. (Rickettsiales), an ecologically widespread clade of intracellular alphaproteobacteria

25 February 2020

cites work

1 reference

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Biochemical diversification through foreign gene expression in bdelloid rotifers

20 June 2018

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Comparative genomics suggests an independent origin of cytoplasmic incompatibility in Cardinium hertigii

20 June 2018

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Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance

20 June 2018

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Ectobiotic and endobiotic bacteria associated with Eutreptiella sp. isolated from Long Island Sound

20 June 2018

1 reference

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Functional diversity within the simple gut microbiota of the honey bee.

20 June 2018

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Novel clade of alphaproteobacterial endosymbionts associated with stinkbugs and other arthropods.

20 June 2018

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Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee

20 June 2018

1 reference

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Molecular identification of rickettsial endosymbionts in the non-phagotrophic volvocalean green algae

20 June 2018

1 reference

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Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade

20 June 2018

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An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin

20 June 2018

1 reference

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Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota

20 June 2018

1 reference

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The SAR11 group of alpha-proteobacteria is not related to the origin of mitochondria

20 June 2018

1 reference

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Pathogen-origin horizontally transferred genes contribute to the evolution of Lepidopteran insects

20 June 2018

1 reference

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The genome of Tetranychus urticae reveals herbivorous pest adaptations

20 June 2018

1 reference

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Reorganizing the protein space at the Universal Protein Resource (UniProt)

20 June 2018

1 reference

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A Rickettsia genome overrun by mobile genetic elements provides insight into the acquisition of genes characteristic of an obligate intracellular lifestyle

20 June 2018

1 reference

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Interactive metagenomic visualization in a Web browser

20 June 2018

1 reference

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SignalP 4.0: discriminating signal peptides from transmembrane regions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Phylogenomic analysis of Odyssella thessalonicensis fortifies the common origin of Rickettsiales, Pelagibacter ubique and Reclimonas americana mitochondrion

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Independent genome reduction and phylogenetic reclassification of the oceanic SAR11 clade

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

An interdependent metabolic patchwork in the nested symbiosis of mealybugs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Phylogenomic Evidence for the Presence of a Flagellum and cbb3 Oxidase in the Free-Living Mitochondrial Ancestor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

New insights into placozoan sexual reproduction and development

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

16S rRNA gene sequence analysis of drinking water using RNA and DNA extracts as targets for clone library development

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

CDD: a Conserved Domain Database for the functional annotation of proteins

20 June 2018

1 reference

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Functional convergence in reduced genomes of bacterial symbionts spanning 200 My of evolution

20 June 2018

1 reference

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DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites

20 June 2018

1 reference

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Endosymbiont DNA in endobacteria-free filarial nematodes indicates ancient horizontal genetic transfer

20 June 2018

1 reference

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"Candidatus anadelfobacter veles" and "Candidatus cyrtobacter comes," two new rickettsiales species hosted by the protist ciliate Euplotes harpa (Ciliophora, Spirotrichea).

20 June 2018

1 reference

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The dynamic genome of Hydra

20 June 2018

1 reference

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FastTree 2--approximately maximum-likelihood trees for large alignments

20 June 2018

1 reference

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Threatened corals provide underexplored microbial habitats

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Bacterial genes in the aphid genome: absence of functional gene transfer from Buchnera to its host

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Phylogenomics reveals a diverse Rickettsiales type IV secretion system

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Wide dispersal and possible multiple origins of low-copy-number plasmids in rickettsia species associated with blood-feeding arthropods

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Fast and accurate long-read alignment with Burrows-Wheeler transform

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Genome sequence of the endosymbiont Rickettsia peacockii and comparison with virulent Rickettsia rickettsii: identification of virulence factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

The Genome of the Amoeba Symbiont "Candidatus Amoebophilus asiaticus" Reveals Common Mechanisms for Host Cell Interaction among Amoeba-Associated Bacteria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Identification of bacterial populations in drinking water using 16S rRNA-based sequence analyses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Convergent evolution of metabolic roles in bacterial co-symbionts of insects

20 June 2018

1 reference

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Circos: an information aesthetic for comparative genomics

20 June 2018

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PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

20 June 2018

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Aphids acquired symbiotic genes via lateral gene transfer

20 June 2018

1 reference

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An anomalous type IV secretion system in Rickettsia is evolutionarily conserved

20 June 2018

1 reference

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Evolution of mutation rates: phylogenomic analysis of the photolyase/cryptochrome family

20 June 2018

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Rickettsia Phylogenomics: Unwinding the Intricacies of Obligate Intracellular Life

20 June 2018

1 reference

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Concatenated analysis sheds light on early metazoan evolution and fuels a modern "urmetazoon" hypothesis

20 June 2018

1 reference

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Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii

20 June 2018

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Evolution of prokaryotic SPFH proteins

20 June 2018

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Genome sequence of the Wolbachia endosymbiont of Culex quinquefasciatus JHB.

20 June 2018

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A rapid bootstrap algorithm for the RAxML Web servers

20 June 2018

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Discovering functional novelty in metagenomes: examples from light-mediated processes

20 June 2018

1 reference

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The Trichoplax genome and the nature of placozoans

20 June 2018

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A mitochondrial protein compendium elucidates complex I disease biology

20 June 2018

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Massive Horizontal Gene Transfer in Bdelloid Rotifers

20 June 2018

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Microbial community gene expression in ocean surface waters

20 June 2018

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The RAST Server: rapid annotations using subsystems technology

20 June 2018

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Wolbachia genome integrated in an insect chromosome: evolution and fate of laterally transferred endosymbiont genes

20 June 2018

1 reference

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Parallel genomic evolution and metabolic interdependence in an ancient symbiosis

20 June 2018

1 reference

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Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome

20 June 2018

1 reference

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Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Long-term maintenance of species-specific bacterial microbiota in the basal metazoan Hydra

20 June 2018

1 reference

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Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

20 June 2018

1 reference

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Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server

20 June 2018

1 reference

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A robust species tree for the alphaproteobacteria

20 June 2018

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Plasmids and rickettsial evolution: insight from Rickettsia felis

20 June 2018

1 reference

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Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

20 June 2018

1 reference

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'Candidatus Midichloria mitochondrii', an endosymbiont of the tick Ixodes ricinus with a unique intramitochondrial lifestyle

20 June 2018

1 reference

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Symbiosis insights through metagenomic analysis of a microbial consortium

20 June 2018

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Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

20 June 2018

1 reference

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Mitochondrial genome of Trichoplax adhaerens supports placozoa as the basal lower metazoan phylum

20 June 2018

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Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Community genomics among stratified microbial assemblages in the ocean's interior

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

My favorite animal, Trichoplax adhaerens

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Serendipitous discovery of Wolbachia genomes in multiple Drosophila species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

20 June 2018

Emerging rickettsioses

1 reference

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A Novel Alpha-Proteobacterium Resides in the Mitochondria of Ovarian Cells of the Tick Ixodes ricinus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

MUSCLE: multiple sequence alignment with high accuracy and high throughput

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Community structure and metabolism through reconstruction of microbial genomes from the environment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Prediction of lipoprotein signal peptides in Gram-negative bacteria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Genome fragment of Wolbachia endosymbiont transferred to X chromosome of host insect

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Enhanced repair of cyclobutane pyrimidine dimers and improved UV resistance in photolyase transgenic mice.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

BLAT—The BLAST-Like Alignment Tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

'Candidatus Odyssella thessalonicensis' gen. nov., sp. nov., an obligate intracellular parasite of Acanthamoeba species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Homology of Hox genes and the zootype concept in early metazoan evolution.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Revised systematics of Holospora-like bacteria and characterization of "Candidatus Gortzia infectiva", a novel macronuclear symbiont of Paramecium jenningsi.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

A study on the presence of flagella in the order Rickettsiales: the case of 'Candidatus Midichloria mitochondrii'

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Ultrastructural analyses support different morphological lineages in the phylum Placozoa Grell, 1971

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

The early evolution of Hox genes: a battle of belief?

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

New findings from an old pathogen: intraerythrocytic bacteria (family Anaplasmatacea) in red-backed salamanders Plethodon cinereus.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Longicorn beetle that vectors pinewood nematode carries many Wolbachia genes on an autosome.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Inferring evolutionary trees with PAUP*.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

Computing Bayes factors using thermodynamic integration.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

A symbiont of the tick Ixodes ricinus invades and consumes mitochondria in a mode similar to that of the parasitic bacterium Bdellovibrio bacteriovorus.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641634

[Special connecting structures between fiber cells of Trichoplax adhaerens F. E. Schulze (author's transl)]

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23475938

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Animal evolution: Trichoplax, trees, and taxonomic turmoil

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23475938

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVT036

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23475938%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23475938%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

PubMed publication ID

23475938

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23475938%20AND%20SRC:MED&resulttype=core&format=json