IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis (Q30574616)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23095257%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23095257%20AND%20SRC:MED&resulttype=core&format=json

inflammatory bowel diseases

16 February 2020

main subject

data analysis

0 references

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23095257%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Federica Viti

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23095257%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Luciano Milanesi

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23095257%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

author name string

I Merelli

1

1 reference

12 August 2017

F Viti

2

1 reference

12 August 2017

L Milanesi

3

1 reference

12 August 2017

7 September 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23095257%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23095257%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

volume

13 Suppl 14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23095257%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

page(s)

S5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23095257%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 2.0 Generic

16 February 2020

copyright license

start time

1 September 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3439730

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-13-s14-s5

0 references

cites work

Reorganizing the protein space at the Universal Protein Resource (UniProt)

1 reference

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Gut microbiota dysbiosis is associated with inflammation and bacterial translocation in mice with CCl4-induced fibrosis.

20 June 2018

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Microenvironmental regulation of stem cells in intestinal homeostasis and cancer

20 June 2018

1 reference

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Intestinal homeostasis and its breakdown in inflammatory bowel disease

20 June 2018

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Integrating diverse databases into an unified analysis framework: a Galaxy approach

20 June 2018

1 reference

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Update on SLC26A3 mutations in congenital chloride diarrhea

20 June 2018

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A United Kingdom inflammatory bowel disease database: making the effort worthwhile

20 June 2018

1 reference

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Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci

20 June 2018

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DMBT1 is a novel gene induced by IL-22 in ulcerative colitis

20 June 2018

1 reference

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Tgf-beta signaling alterations and colon cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439730

Inflammatory bowel disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439730

Inflammation driven by overexpression of the hypoglycosylated abnormal mucin 1 (MUC1) links inflammatory bowel disease and pancreatitis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439730

A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population

20 June 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

20 June 2018

1 reference

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ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression

20 June 2018

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The UCSC Genome Browser Database: update 2009

20 June 2018

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Reactome knowledgebase of human biological pathways and processes

20 June 2018

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Therapeutic correction of bacterial dysbiosis discovered by molecular techniques

20 June 2018

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InterPro: the integrative protein signature database

20 June 2018

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Analysis of the methylation status of genes up-regulated by the demethylating agent, 5-aza-2'-deoxycytidine, in esophageal squamous cell carcinoma

20 June 2018

1 reference

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Genetic determinants of ulcerative colitis include the ECM1 locus and five loci implicated in Crohn's disease

20 June 2018

1 reference

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Blocking TNF-alpha in mice reduces colorectal carcinogenesis associated with chronic colitis

20 June 2018

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20 June 2018

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Therapeutic strategies for targeting the IL-6/STAT3 cytokine signaling pathway in inflammatory bowel disease.

20 June 2018

1 reference

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Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439730

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

20 June 2018

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Dysbiosis in inflammatory bowel disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439730

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

20 June 2018

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Significance analysis of microarrays applied to the ionizing radiation response

20 June 2018

1 reference

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Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

20 June 2018

1 reference

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Genome-wide gene expression differences in Crohn's disease and ulcerative colitis from endoscopic pinch biopsies: insights into distinctive pathogenesis.

20 June 2018

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Robust estimators for expression analysis.

21 January 2018

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CD48 controls T-cell and antigen-presenting cell functions in experimental colitis.

21 January 2018

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Risk for colorectal cancer in ulcerative colitis: changes, causes and management strategies

21 January 2018

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21 January 2018

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Editorial: Administrative Database Studies in IBD: A Cautionary Tale

21 January 2018

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12 December 2020

Apoptosis in the intestinal mucosa of patients with inflammatory bowel disease: evidence of altered expression of FasL and perforin cytotoxic pathways

1 reference

12 December 2020

IL-6 signaling promotes tumor growth in colorectal cancer

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12 December 2020

Gene annotation and pathway mapping in KEGG

1 reference

12 December 2020

10.1186/1471-2105-13-S14-S5

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23095257%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/MerelliVM12

16 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23095257%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference