A system for exact and approximate genetic linkage analysis of SNP data in large pedigrees (Q30577869)

14 August 2017

A system for exact and approximate genetic linkage analysis of SNP data in large pedigrees (English)

1 reference

14 August 2017

2

Omer Weissbrod

1 reference

14 August 2017

Mark Silberstein

1

1 reference

14 August 2017

Lars Otten

3

1 reference

14 August 2017

Anna Tzemach

4

1 reference

14 August 2017

Andrei Anisenia

5

1 reference

14 August 2017

Oren Shtark

6

1 reference

14 August 2017

Dvir Tuberg

7

1 reference

14 August 2017

Eddie Galfrin

8

1 reference

14 August 2017

Irena Gannon

9

1 reference

14 August 2017

Adel Shalata

10

1 reference

14 August 2017

Zvi U Borochowitz

11

1 reference

14 August 2017

Rina Dechter

12

1 reference

14 August 2017

Elizabeth Thompson

13

1 reference

14 August 2017

Dan Geiger

14

1 reference

14 August 2017

language of work or name

English

0 references

publication date

18 November 2012

1 reference

14 August 2017

1 reference

14 August 2017

29

1 reference

14 August 2017

2

1 reference

14 August 2017

197-205

1 reference

The role of large pedigrees in an era of high-throughput sequencing

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Linkage analysis in the next-generation sequencing era

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Exome sequencing as a tool for Mendelian disease gene discovery

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Reducing the exome search space for mendelian diseases using genetic linkage analysis of exome genotypes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Finding most likely haplotypes in general pedigrees through parallel search with dynamic load balancing.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Handling linkage disequilibrium in qualitative trait linkage analysis using dense SNPs: a two-step strategy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

SNP HiTLink: a high-throughput linkage analysis system employing dense SNP data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

A multiple splitting approach to linkage analysis in large pedigrees identifies a linkage to asthma on chromosome 12.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Identity-by-descent estimation and mapping of qualitative traits in large, complex pedigrees

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

A SNP streak model for the identification of genetic regions identical-by-descent

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Exact trait-model-free tests for linkage detection in pedigrees

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Modeling linkage disequilibrium in exact linkage computations: a comparison of first-order Markov approaches and the clustered-markers approach

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Shared genomic segment analysis. Mapping disease predisposition genes in extended pedigrees using SNP genotype assays.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Multilocus lod scores in large pedigrees: combination of exact and approximate calculations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Breaking loops in large complex pedigrees

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

IGG: A tool to integrate GeneChips for genetic studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Online system for faster multipoint linkage analysis via parallel execution on thousands of personal computers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Metabolic syndrome--a new world-wide definition. A Consensus Statement from the International Diabetes Federation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Handling marker-marker linkage disequilibrium: pedigree analysis with clustered markers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

easyLINKAGE-Plus--automated linkage analyses using large-scale SNP data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

SNPLINK: multipoint linkage analysis of densely distributed SNP data incorporating automated linkage disequilibrium removal

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Mega2: data-handling for facilitating genetic linkage and association analyses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

A genomewide search using an original pairwise sampling approach for large genealogies identifies a new locus for total and low-density lipoprotein cholesterol in two genetically differentiated isolates of Sardinia.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

SNPP: automating large-scale SNP genotype data management.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Guidelines for genotyping in genomewide linkage studies: single-nucleotide-polymorphism maps versus microsatellite maps

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

A pedigree partitioning approach to quantitative trait loci mapping of IgE serum level in the GAW12 Hutterite data.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

The effect of pedigree complexity on quantitative trait linkage analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Merlin--rapid analysis of dense genetic maps using sparse gene flow trees

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Rapid multipoint linkage analysis via inheritance vectors in the Elston-Stewart algorithm

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Markov chain Monte Carlo segregation and linkage analysis for oligogenic models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Parametric and nonparametric linkage analysis: a unified multipoint approach

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Descent graphs in pedigree analysis: applications to haplotyping, location scores, and marker-sharing statistics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Faster sequential genetic linkage computations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

A General Model for the Genetic Analysis of Pedigree Data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Estimation of the recombination fraction in human pedigrees: efficient computation of the likelihood for human linkage studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Multilocus linkage analysis in humans: detection of linkage and estimation of recombination

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Construction of multilocus genetic linkage maps in humans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546794

Linkage analysis with dense SNP maps in isolated populations

20 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

Jenti: an efficient tool for mining complex inbred genealogies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

Exact genetic linkage computations for general pedigrees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

Inference from Iterative Simulation Using Multiple Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

PedStr software for cutting large pedigrees for haplotyping, IBD computation and multipoint linkage analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

A general method for linkage disequilibrium correction for multipoint linkage and association

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

An approach for cutting large and complex pedigrees for linkage analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

Characterization of multilocus linkage disequilibrium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

Caution on pedigree haplotype inference with software that assumes linkage equilibrium

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

Madeline 2.0 PDE: a new program for local and web-based pedigree drawing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

Next-generation linkage analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

A class of tests for linkage using affected pedigree members

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

A multilocus linkage disequilibrium measure based on mutual information theory and its applications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

An Introduction to MCMC for Machine Learning

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS658

HaploPainter: a tool for drawing pedigrees with complex haplotypes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23162081

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Programs for pedigree analysis: Mendel, Fisher, and dGene

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23162081

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Maximum likelihood haplotyping for general pedigrees

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23162081

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTS658

1 reference

journals/bioinformatics/SilbersteinWOTASTGGSBDTG13

14 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

14 August 2017

PubMed publication ID

23162081

1 reference