Next-generation text-mining mediated generation of chemical response-specific gene sets for interpretation of gene expression data (Q30586501)

15 August 2017

Next-generation text-mining mediated generation of chemical response-specific gene sets for interpretation of gene expression data (English)

1 reference

15 August 2017

1 reference

9

Jan A Kors

0 references

Kristina M. Hettne

object named as

Kristina M Hettne

1

0 references

Jelle J Goeman

object named as

Jelle J Goeman

4

0 references

Dorien A M van Dartel

object named as

Dorien A M van Dartel

3

1 reference

ORCID Public Data File 2021

author name string

André Boorsma

2

1 reference

15 August 2017

Esther de Jong

5

1 reference

15 August 2017

Aldert H Piersma

6

1 reference

15 August 2017

Rob H Stierum

7

1 reference

15 August 2017

Jos C Kleinjans

8

1 reference

15 August 2017

Jan A Kors

9

1 reference

15 August 2017

29 January 2013

1 reference

15 August 2017

1 reference

15 August 2017

6

1 reference

15 August 2017

2

1 reference

https://scigraph.springernature.com/pub.10.1186/1755-8794-6-2

15 August 2017

0 references

cites work

Gene set assembly for quantitative prediction of developmental toxicity in the embryonic stem cell test.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Discriminating classes of developmental toxicants using gene expression profiling in the embryonic stem cell test

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Literature-aided interpretation of gene expression data with the weighted global test

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

The Comparative Toxicogenomics Database: update 2011.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Predicting environmental chemical factors associated with disease-related gene expression data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

The genomic response of Ishikawa cells to bisphenol A exposure is dose- and time-dependent

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Application of connectivity mapping in predictive toxicology based on gene-expression similarity.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

A dictionary to identify small molecules and drugs in free text

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Anni 2.0: a multipurpose text-mining tool for the life sciences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

PPARalpha-mediated effects of dietary lipids on intestinal barrier gene expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Dissecting complex transcriptional responses using pathway-level scores based on prior information

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Functional profiling of microarray experiments using text-mining derived bioentities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Whole-genome cartography of estrogen receptor alpha binding sites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Discrimination of vanadium from zinc using gene profiling in human bronchial epithelial cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Aryl hydrocarbon receptor regulates distinct dioxin-dependent and dioxin-independent gene batteries

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

T-profiler: scoring the activity of predefined groups of genes using gene expression data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

A global test for groups of genes: testing association with a clinical outcome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Gene ontology: tool for the unification of biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Biochemical basis for the activity and selectivity of oral antifungal drugs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3572439

Profiling the activity of environmental chemicals in prenatal developmental toxicity studies using the U.S. EPA's ToxRefDB.

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-6-2

Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-6-2

Gene expression profiling of 17beta-estradiol and genistein effects on mouse thymus

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-6-2

1alpha,25-dihydroxy-vitamin D3 stimulation of bronchial smooth muscle cells induces autocrine, contractility, and remodeling processes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-6-2

Monitoring developmental toxicity in the embryonic stem cell test using differential gene expression of differentiation-related genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-6-2

Comparison of the mouse Embryonic Stem cell Test, the rat Whole Embryo Culture and the Zebrafish Embryotoxicity Test as alternative methods for developmental toxicity testing of six 1,2,4-triazoles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-6-2

21 January 2018

Identifiers

DOI

10.1186/1755-8794-6-2

1 reference

Dimensions Publication ID

15 August 2017

0 references

1 reference

15 August 2017

1 reference