Structural analysis and modeling reveals new mechanisms governing ESCRT-III spiral filament assembly (Q30587034)

17 October 2017

Structural analysis and modeling reveals new mechanisms governing ESCRT-III spiral filament assembly (English)

1 reference

17 October 2017

9

Paul Ahlquist

1 reference

17 October 2017

Qing-Tao Shen

1

1 reference

17 October 2017

Amber L Schuh

2

1 reference

17 October 2017

Yuqing Zheng

3

1 reference

17 October 2017

Kyle Quinney

4

1 reference

17 October 2017

Lei Wang

5

1 reference

17 October 2017

Michael Hanna

6

1 reference

17 October 2017

Julie C Mitchell

7

1 reference

17 October 2017

Marisa S Otegui

8

1 reference

17 October 2017

Qiang Cui

10

1 reference

17 October 2017

Anjon Audhya

11

1 reference

17 October 2017

language of work or name

English

0 references

publication date

8 September 2014

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17 October 2017

15

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inferred from page(s)

published in

Journal of Cell Biology

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17 October 2017

206

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17 October 2017

6

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17 October 2017

763-777

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Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald

17 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Structure of cellular ESCRT-III spirals and their relationship to HIV budding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Coordinated binding of Vps4 to ESCRT-III drives membrane neck constriction during MVB vesicle formation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

In vivo imaging of C. elegans endocytosis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Electron cryotomography of ESCRT assemblies and dividing Sulfolobus cells suggests that spiraling filaments are involved in membrane scission

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Membrane fission reactions of the mammalian ESCRT pathway

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

The endosomal sorting complex ESCRT-II mediates the assembly and architecture of ESCRT-III helices

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Are Protein Force Fields Getting Better? A Systematic Benchmark on 524 Diverse NMR Measurements

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

CC2D1A Is a Regulator of ESCRT-III CHMP4B

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Association of the endosomal sorting complex ESCRT-II with the Vps20 subunit of ESCRT-III generates a curvature-sensitive complex capable of nucleating ESCRT-III filaments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Dynamin: functional design of a membrane fission catalyst.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

ProDy: protein dynamics inferred from theory and experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

ESCRT-III protein requirements for HIV-1 budding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Cortical constriction during abscission involves helices of ESCRT-III-dependent filaments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Generalized Born model with a simple, robust molecular volume correction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Human ESCRT-III and VPS4 proteins are required for centrosome and spindle maintenance

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Membrane budding and scission by the ESCRT machinery: it's all in the neck

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

I-TASSER: a unified platform for automated protein structure and function prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

ESCRT-II coordinates the assembly of ESCRT-III filaments for cargo sorting and multivesicular body vesicle formation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Computational model of membrane fission catalyzed by ESCRT-III.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Structural basis for ESCRT-III protein autoinhibition

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

A crescent-shaped ALIX dimer targets ESCRT-III CHMP4 filaments.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Helical structures of ESCRT-III are disassembled by VPS4

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Two distinct modes of ESCRT-III recognition are required for VPS4 functions in lysosomal protein targeting and HIV-1 budding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Comparative protein structure modeling using Modeller

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Structural basis for autoinhibition of ESCRT-III CHMP3

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

I-TASSER server for protein 3D structure prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Plasma membrane deformation by circular arrays of ESCRT-III protein filaments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

ESCRT-III recognition by VPS4 ATPases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Structure/function analysis of four core ESCRT-III proteins reveals common regulatory role for extreme C-terminal domain

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

COBALT: constraint-based alignment tool for multiple protein sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Structural basis for budding by the ESCRT-III factor CHMP3

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

A complex containing the Sm protein CAR-1 and the RNA helicase CGH-1 is required for embryonic cytokinesis in Caenorhabditis elegans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

ESCRT-II, an endosome-associated complex required for protein sorting: crystal structure and interactions with ESCRT-III and membranes.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Structure of the ESCRT-II endosomal trafficking complex

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

UCSF Chimera--a visualization system for exploratory research and analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Negative staining and image classification — powerful tools in modern electron microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Escrt-III: an endosome-associated heterooligomeric protein complex required for mvb sorting

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

EMAN: semiautomated software for high-resolution single-particle reconstructions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

VMD: visual molecular dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Computer visualization of three-dimensional image data using IMOD

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

A new generation of the IMAGIC image processing system

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

Determination of molecular weights and frictional ratios of proteins in impure systems by use of gel filtration and density gradient centrifugation. Application to crude preparations of sulfite and hydroxylamine reductases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164947

ZDOCK: an initial-stage protein-docking algorithm.

20 June 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201403108

Structure and disassembly of filaments formed by the ESCRT-III subunit Vps24.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201403108

ESCRT-III polymers in membrane neck constriction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201403108

A modified TIP3P water potential for simulation with Ewald summation

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201403108

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201403108

Ordered assembly of the ESCRT-III complex on endosomes is required to sequester cargo during MVB formation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201403108

KFC2: a knowledge-based hot spot prediction method based on interface solvation, atomic density, and plasticity features.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201403108

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201403108

Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25202029

12 December 2020

inferred from PubMed ID database lookup

An automated decision-tree approach to predicting protein interaction hot spots

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25202029

12 December 2020

inferred from PubMed ID database lookup

NMR-based protein potentials

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25202029

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1083/JCB.201403108

1 reference

17 October 2017

1 reference

17 October 2017

1 reference