Defining, comparing, and improving iTRAQ quantification in mass spectrometry proteomics data (Q30597097)

16 October 2017

Defining, comparing, and improving iTRAQ quantification in mass spectrometry proteomics data (English)

1 reference

16 October 2017

4

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16 October 2017

5

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16 October 2017

Lina Hultin-Rosenberg

series ordinal

1

1 reference

PMCID

3708183

16 October 2017

Jenny Forshed

series ordinal

2

1 reference

PMCID

3708183

16 October 2017

Rui M M Branca

series ordinal

3

1 reference

16 October 2017

7 March 2013

1 reference

Molecular & Cellular Proteomics

16 October 2017

1 reference

16 October 2017

12

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16 October 2017

7

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16 October 2017

2021-2031

1 reference

Proteomic screen reveals Fbw7 as a modulator of the NF-κB pathway.

16 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

The quantitative proteome of a human cell line.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Deep proteome and transcriptome mapping of a human cancer cell line

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Comprehensive comparison of iTRAQ and label-free LC-based quantitative proteomics approaches using two Chlamydomonas reinhardtii strains of interest for biofuels engineering.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Enhanced information output from shotgun proteomics data by protein quantification and peptide quality control (PQPQ).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Options and considerations when selecting a quantitative proteomics strategy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Addressing accuracy and precision issues in iTRAQ quantitation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

iTRAQ underestimation in simple and complex mixtures: "the good, the bad and the ugly".

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Quantitative membrane proteomics applying narrow range peptide isoelectric focusing for studies of small cell lung cancer resistance mechanisms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Quantitative mass spectrometry in proteomics: a critical review

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Optimized proteomic analysis of a mouse model of cerebellar dysfunction using amine-specific isobaric tags

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Mass spectrometry-based proteomics turns quantitative

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708183

Technical, experimental, and biological variations in isobaric tags for relative and absolute quantitation (iTRAQ).

20 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.021592

Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.021592

The potential cost of high-throughput proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.021592

The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.021592

Multi-Q: a fully automated tool for multiplexed protein quantitation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23471484

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The pros and cons of peptide-centric proteomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23471484

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.M112.021592

1 reference

16 October 2017

1 reference

16 October 2017

1 reference

PMCID

3708183