Transcriptome analyses to investigate symbiotic relationships between marine protists (Q30628449)

18 October 2017

Transcriptome analyses to investigate symbiotic relationships between marine protists (English)

1 reference

18 October 2017

4

1 reference

18 October 2017

7

Julie Poulain

0 references

Sergio Balzano

Sergio Balzano

1

0 references

Erwan Corre

Erwan Corre

2

0 references

Corinne Da Silva

Corinne Da Silva

6

0 references

Patrick Wincker

5

Patrick Wincker

1 reference

18 October 2017

3

Johan Decelle

1 reference

18 October 2017

9

Fabrice Not

1 reference

18 October 2017

17 March 2015

1 reference

Frontiers in Microbiology

18 October 2017

1 reference

18 October 2017

6

1 reference

18 October 2017

98

1 reference

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

18 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

The others: our biased perspective of eukaryotic genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Pyrosequencing reveals diverse microbial community associated with the zoanthid Palythoa australiae from the South China Sea.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Deep relationships of Rhizaria revealed by phylogenomics: a farewell to Haeckel's Radiolaria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

An original mode of symbiosis in open ocean plankton

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Transcriptome analysis of foraminiferan Elphidium margaritaceum questions the role of gene transfer in kleptoplastidy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Study of cnidarian-algal symbiosis in the "omics" age.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Unveiling in situ interactions between marine protists and bacteria through single cell sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Radiolaria divided into Polycystina and Spasmaria in combined 18S and 28S rDNA phylogeny

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

High-throughput sequencing of Astrammina rara: sampling the giant genome of a giant foraminiferan protist

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Sequence variability of the pattern recognition receptor Mermaid mediates specificity of marine nematode symbioses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Genomics of biotrophic, plant-infecting plasmodiophorids using in vitro dual cultures.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Genomic and functional adaptation in surface ocean planktonic prokaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Coral bleaching under thermal stress: putative involvement of host/symbiont recognition mechanisms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Comprehensive EST analysis of the symbiotic sea anemone, Anemonia viridis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

The diversity of C-type lectins in the genome of a basal metazoan, Nematostella vectensis.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Coral life history and symbiosis: functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Molecular diversity of alveolates associated with neritic north atlantic radiolarians

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

A new C-type lectin similar to the human immunoreceptor DC-SIGN mediates symbiont acquisition by a marine nematode.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

The C-type lectin-like domain superfamily

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

KEGG: kyoto encyclopedia of genes and genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Molecular phylogeny of symbiotic dinoflagellates from planktonic foraminifera and radiolaria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4362344

Identification of a Marine Cyanophage in a Protist Single-cell Metagenome Assembly

20 June 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00098

The intracellular cyanobacteria of Paulinella chromatophora: endosymbionts or organelles?

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00098

Isolation of Symbiotically Expressed Genes From the Dinoflagellate Symbiont of the Solitary Radiolarian Thalassicolla nucleata

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00098

Introduction to the analysis of environmental sequences: metagenomics with MEGAN.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00098

An ancient and variable mannose-binding lectin from the coral Acropora millepora binds both pathogens and symbionts.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00098

INVESTIGATING THE BIODIVERSITY, ECOLOGY, AND PHYLOGENY OF ENDOSYMBIOTIC DINOFLAGELLATES IN THE GENUS SYMBIODINIUM USING THE ITS REGION: IN SEARCH OF A "SPECIES" LEVEL MARKER

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00098

Brandtodinium gen. nov. and B. nutricula comb. Nov. (Dinophyceae), a dinoflagellate commonly found in symbiosis with polycystine radiolarians

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00098

Algal symbiont type affects gene expression in juveniles of the coral Acropora tenuis exposed to thermal stress.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00098

Comparative analysis of structural properties of the C-type-lectin-like domain (CTLD).

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00098

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00098

Multiple microalgal partners in symbiosis with the acantharian Acanthochiasma sp. (Radiolaria)

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00098

Lectin/glycan interactions play a role in recognition in a coral/dinoflagellate symbiosis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25852650

12 December 2020

inferred from PubMed ID database lookup

Profiling differential gene expression of symbiotic and aposymbiotic corals using a high coverage gene expression profiling (HiCEP) analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25852650

12 December 2020

inferred from PubMed ID database lookup

Genomic understanding of dinoflagellates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25852650

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.3389/FMICB.2015.00098

1 reference

release_pwkaouznone2nkprgxlmr2ldou

18 October 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/pwkaouznone2nkprgxlmr2ldou

24 November 2022

mapped directly with Wikidata item

PMCID

4362344

1 reference

18 October 2017

1 reference

PMCID

4362344