A modular framework for gene set analysis integrating multilevel omics data (Q30663351)

18 October 2017

A modular framework for gene set analysis integrating multilevel omics data (English)

1 reference

18 October 2017

4

1 reference

18 October 2017

Florian Buettner

2

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author name string

Steffen Sass

series ordinal

1

1 reference

PMCID

3834824

18 October 2017

Nikola S Mueller

series ordinal

3

1 reference

PMCID

3834824

18 October 2017

language of work or name

English

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publication date

23 August 2013

1 reference

18 October 2017

Nucleic Acids Research

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18 October 2017

41

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18 October 2017

21

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18 October 2017

9622-9633

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Creative Commons Attribution-NonCommercial 3.0 Unported

18 October 2017

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data

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Diverse types of genetic variation converge on functional gene networks involved in schizophrenia

20 June 2018

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Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data

20 June 2018

1 reference

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KEGG for integration and interpretation of large-scale molecular data sets

20 June 2018

1 reference

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MicroRNAs coordinately regulate protein complexes

20 June 2018

1 reference

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Degrading devices: invadosomes in proteolytic cell invasion

20 June 2018

1 reference

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A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

20 June 2018

1 reference

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miTALOS: analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs

20 June 2018

1 reference

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Joint genetic analysis of gene expression data with inferred cellular phenotypes

20 June 2018

1 reference

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An empirical Bayes model for gene expression and methylation profiles in antiestrogen resistant breast cancer

20 June 2018

1 reference

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Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs

20 June 2018

1 reference

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Towards a rigorous assessment of systems biology models: the DREAM3 challenges

20 June 2018

1 reference

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GOing Bayesian: model-based gene set analysis of genome-scale data

20 June 2018

1 reference

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Inhibition of glycolysis enhances cisplatin-induced apoptosis in ovarian cancer cells

20 June 2018

1 reference

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PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes

20 June 2018

1 reference

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Mitochondrial function is an inducible determinant of osmotic stress adaptation in yeast.

20 June 2018

1 reference

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A systems biology network model for genetic association studies of nicotine addiction and treatment.

20 June 2018

1 reference

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Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer

20 June 2018

1 reference

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Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

20 June 2018

1 reference

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A probabilistic generative model for GO enrichment analysis

20 June 2018

1 reference

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Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

MicroRNA expression profiles classify human cancers

20 June 2018

1 reference

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Cisplatin-induced apoptosis is enhanced by hypoxia and by inhibition of mitochondria in renal collecting duct cells.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

Osmotic stress signaling and osmoadaptation in yeasts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

Multiclass cancer diagnosis using tumor gene expression signatures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

Mechanisms of resistance to cisplatin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

The Saccharomyces cerevisiae Sko1p transcription factor mediates HOG pathway-dependent osmotic regulation of a set of genes encoding enzymes implicated in protection from oxidative damage

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

Gene ontology: tool for the unification of biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

Signaling--2000 and beyond

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

Approximate Statistical Tests for Comparing Supervised Classification Learning Algorithms.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

An antioxidative mechanism mediated by the yeast N-acetyltransferase Mpr1: oxidative stress-induced arginine synthesis and its physiological role

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

Beyond atopy: multiple patterns of sensitization in relation to asthma in a birth cohort study

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834824

The lipid content of cisplatin- and doxorubicin-resistant MCF-7 human breast cancer cells

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23975194

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKT752

1 reference

18 October 2017

1 reference

18 October 2017

1 reference

PMCID

3834824