Structure, Stiffness and Substates of the Dickerson-Drew Dodecamer. (Q30663429)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23976886%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

title

Structure, Stiffness and Substates of the Dickerson-Drew Dodecamer (English)

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8 March 2020

1

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8 March 2020

Alberto Perez

2

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8 March 2020

Alexandre V Morozov

4

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8 March 2020

Jirí Sponer

5

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8 March 2020

3

Modesto Orozco

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8 March 2020

author name string

Filip Lankaš

6

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8 March 2020

publication date

1 January 2013

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Journal of Chemical Theory and Computation

8 March 2020

published in

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8 March 2020

volume

9

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8 March 2020

issue

1

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8 March 2020

page(s)

707-721

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Can We Accurately Describe the Structure of Adenine Tracts in B-DNA? Reference Quantum-Chemical Computations Reveal Overstabilization of Stacking by Molecular Mechanics

8 March 2020

cites work

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Solution Structure of the Dickerson DNA Dodecamer Containing a Single Ribonucleotide

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Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations

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20 June 2018

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Sequence-dependent DNA deformability studied using molecular dynamics simulations

20 June 2018

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Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers

20 June 2018

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A physical picture of atomic motions within the Dickerson DNA dodecamer in solution derived from joint ensemble refinement against NMR and large-angle X-ray scattering data

20 June 2018

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Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps

20 June 2018

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20 June 2018

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20 June 2018

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DNA Basepair Step Deformability Inferred from Molecular Dynamics Simulations

20 June 2018

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20 June 2018

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Overall structure and sugar dynamics of a DNA dodecamer from homo- and heteronuclear dipolar couplings and 31P chemical shift anisotropy

20 June 2018

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The non-Watson-Crick base pairs and their associated isostericity matrices

20 June 2018

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20 June 2018

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20 June 2018

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A new crystal form for the dodecamer C-G-C-G-A-A-T-T-C-G-C-G: symmetry effects on sequence-dependent DNA structure

20 June 2018

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Structure of d(CGCGAATTCGCG) in the presence of Ca(2+) ions

20 June 2018

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Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing

20 June 2018

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20 June 2018

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20 June 2018

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The B-DNA dodecamer at high resolution reveals a spine of water on sodium

20 June 2018

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20 June 2018

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Kinetics and energetics of base-pair opening in 5'-d(CGCGAATTCGCG)-3' and a substituted dodecamer containing G.T mismatches

20 June 2018

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Phosphorus chemical shifts in a nucleic acid backbone from combined molecular dynamics and density functional calculations

20 June 2018

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On the parameterization of rigid base and basepair models of DNA from molecular dynamics simulations.

25 November 2018

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25 November 2018

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25 November 2018

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X-ray and NMR Studies of the DNA Oligomer d(ATATAT): Hoogsteen Base Pairing in Duplex DNA†

25 November 2018

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DNA deformability at the base pair level.

25 November 2018

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25 November 2018

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25 November 2018

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25 November 2018

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Influence of packing interactions on the average conformation of B-DNA in crystalline structures

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Identifiers

DOI

10.1021/CT300671Y

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23976886%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23976886%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

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