A sampling framework for incorporating quantitative mass spectrometry data in protein interaction analysis (Q30671372)

19 August 2017

A sampling framework for incorporating quantitative mass spectrometry data in protein interaction analysis (English)

1 reference

19 August 2017

3

Bonnie Berger

1 reference

19 August 2017

George Tucker

1

1 reference

PMCID

3851523

19 August 2017

Po-Ru Loh

series ordinal

2

1 reference

19 August 2017

4 October 2013

1 reference

19 August 2017

1 reference

19 August 2017

14

1 reference

19 August 2017

299

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-14-299

19 August 2017

0 references

cites work

Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments

1 reference

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SAINT-MS1: protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments

20 June 2018

1 reference

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Global landscape of HIV-human protein complexes

20 June 2018

1 reference

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A protein complex network of Drosophila melanogaster

20 June 2018

1 reference

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Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling

20 June 2018

1 reference

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Construction of co-complex score matrix for protein complex prediction from AP-MS data

20 June 2018

1 reference

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SAINT: probabilistic scoring of affinity purification-mass spectrometry data

20 June 2018

1 reference

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Modeling contaminants in AP-MS/MS experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

Identification of protein complexes from co-immunoprecipitation data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila

20 June 2018

1 reference

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Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

A novel scoring approach for protein co-purification data reveals high interaction specificity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

Defining the human deubiquitinating enzyme interaction landscape

20 June 2018

1 reference

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From pull-down data to protein interaction networks and complexes with biological relevance

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.

20 June 2018

1 reference

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Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

Proteome survey reveals modularity of the yeast cell machinery

20 June 2018

1 reference

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BioGRID: a general repository for interaction datasets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

A protein interaction map of Drosophila melanogaster

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

Functional organization of the yeast proteome by systematic analysis of protein complexes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

A comprehensive two-hybrid analysis to explore the yeast protein interactome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851523

Potential for false positive identifications from large databases through tandem mass spectrometry.

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-14-299

Evaluation of clustering algorithms for protein complex and protein interaction network assembly.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-14-299

Deconvolution of targeted protein-protein interaction maps.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-14-299

21 January 2018

Identifiers

DOI

10.1186/1471-2105-14-299

1 reference

journals/bmcbi/TuckerLB13

19 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

19 August 2017

1 reference

PMCID

3851523