EBI metagenomics--a new resource for the analysis and archiving of metagenomic data (Q30685254)

21 August 2017

EBI metagenomics--a new resource for the analysis and archiving of metagenomic data (English)

1 reference

Alejandra González-Beltrán

21 August 2017

1 reference

5

1 reference

26 June 2017

21

1 reference

PubMed ID

24165880

26 June 2017

Susanna-Assunta Sansone

23

0 references

Philippe Rocca-Serra

17

0 references

Rajesh Radhakrishnan

16

Rajesh Radhakrishnan

1 reference

21 August 2017

Matthew Fraser

4

0 references

Daniel Vaughan

Daniel Vaughan

20

0 references

Maxim Scheremetjew

Maxim Scheremetjew

18

0 references

Sarah Hunter

Sarah Hunter

1

0 references

Hubert Denise

Hubert Denise

3

0 references

Alex Mitchell

Alex Mitchell

12

0 references

Christopher I. Hunter

Christopher Hunter

6

0 references

Peter Sterk

Peter Sterk

19

0 references

Eamonn Maguire

10

Eamonn Maguire

1 reference

21 August 2017

9

Craig McAnulla

1 reference

21 August 2017

11

John Maslen

1 reference

21 August 2017

Matthew Corbett

2

1 reference

21 August 2017

Philip Jones

7

1 reference

21 August 2017

Rasko Leinonen

8

1 reference

21 August 2017

Gift Nuka

13

1 reference

21 August 2017

Arnaud Oisel

14

1 reference

21 August 2017

Sebastien Pesseat

15

1 reference

21 August 2017

Dawn Field

22

1 reference

21 August 2017

language of work or name

English

0 references

publication date

27 October 2013

1 reference

21 August 2017

Nucleic Acids Research

1 reference

21 August 2017

42

1 reference

21 August 2017

Database issue

1 reference

21 August 2017

D600-6

1 reference

Creative Commons Attribution 3.0 Unported

21 August 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

TIGRFAMs and Genome Properties in 2013.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Update on activities at the Universal Protein Resource (UniProt) in 2013

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

New and continuing developments at PROSITE.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Assessing the diversity and specificity of two freshwater viral communities through metagenomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Toward interoperable bioscience data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

The Pfam protein families database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

InterPro in 2011: new developments in the family and domain prediction database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

IMG/M: the integrated metagenome data management and comparative analysis system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Interactive metagenomic visualization in a Web browser

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

rRNASelector: a computer program for selecting ribosomal RNA encoding sequences from metagenomic and metatranscriptomic shotgun libraries

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

The Genomic Standards Consortium

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

The human oral microbiome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

A human gut microbial gene catalogue established by metagenomic sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Biopython: freely available Python tools for computational molecular biology and bioinformatics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

The airborne metagenome in an indoor urban environment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Environmental genome shotgun sequencing of the Sargasso Sea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Gene ontology: tool for the unification of biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965009

Strategies for Enhancing the Effectiveness of Metagenomic-based Enzyme Discovery in Lignocellulolytic Microbial Communities

28 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT961

Major submissions tool developments at the European Nucleotide Archive

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT961

Search and clustering orders of magnitude faster than BLAST

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT961

QIIME allows analysis of high-throughput community sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT961

FragGeneScan: predicting genes in short and error-prone reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT961

21 January 2018

Identifiers

DOI

10.1093/NAR/GKT961

1 reference

journals/nar/HunterCDFBHJLMMMMNOPRRSSVCFS14

21 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

21 August 2017

1 reference