rSeqDiff: detecting differential isoform expression from RNA-Seq data using hierarchical likelihood ratio test (Q30698709)

15 October 2017

rSeqDiff: detecting differential isoform expression from RNA-Seq data using hierarchical likelihood ratio test (English)

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15 October 2017

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2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24260225%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

author name string

Yang Shi

series ordinal

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24260225%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

language of work or name

English

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publication date

18 November 2013

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15 October 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24260225%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

volume

8

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24260225%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

issue

11

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24260225%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

page(s)

e79448

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Creative Commons Attribution 3.0 Unported

8 June 2020

copyright license

start time

18 November 2013

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DEseq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Statistical properties of an early stopping rule for resampling-based multiple testing.

20 June 2018

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A Hierarchical Bayesian Model for Estimating and Inferring Differential Isoform Expression for Multi-Sample RNA-Seq Data

20 June 2018

1 reference

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Differential analysis of gene regulation at transcript resolution with RNA-seq

20 June 2018

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A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data

20 June 2018

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Emerging Roles of Alternative Pre-mRNA Splicing Regulation in Neuronal Development and Function

20 June 2018

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Detecting differential usage of exons from RNA-seq data

20 June 2018

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Identifying differentially expressed transcripts from RNA-seq data with biological variation

20 June 2018

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

20 June 2018

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Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing

20 June 2018

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Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

20 June 2018

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MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data

20 June 2018

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The role of NrCAM in neural development and disorders--beyond a simple glue in the brain

20 June 2018

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FDM: a graph-based statistical method to detect differential transcription using RNA-seq data

20 June 2018

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Increased secreted amyloid precursor protein-α (sAPPα) in severe autism: proposal of a specific, anabolic pathway and putative biomarker

20 June 2018

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Computational methods for transcriptome annotation and quantification using RNA-seq

20 June 2018

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Transcriptomic analysis of autistic brain reveals convergent molecular pathology

20 June 2018

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Autism, Alzheimer disease, and fragile X: APP, FMRP, and mGluR5 are molecular links

20 June 2018

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Epigenetics in alternative pre-mRNA splicing

20 June 2018

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Analysis and design of RNA sequencing experiments for identifying isoform regulation

20 June 2018

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Differential expression analysis for sequence count data

20 June 2018

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CisGenome Browser: a flexible tool for genomic data visualization

20 June 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

20 June 2018

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Aberrant RNA processing events in neurological disorders

20 June 2018

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Statistical inferences for isoform expression in RNA-Seq

20 June 2018

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Peripheral biomarkers in Autism: secreted amyloid precursor protein-alpha as a probable key player in early diagnosis

20 June 2018

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20 June 2018

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

20 June 2018

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Alternative isoform regulation in human tissue transcriptomes

20 June 2018

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Association of the neuronal cell adhesion molecule (NRCAM) gene variants with autism

20 June 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

20 June 2018

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Promotion of BACE1 mRNA alternative splicing reduces amyloid beta-peptide production

20 June 2018

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Insights into the connection between cancer and alternative splicing

20 June 2018

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20 June 2018

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Neuronal regulation of alternative pre-mRNA splicing

20 June 2018

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Splicing regulation in neurologic disease

20 June 2018

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Are splicing mutations the most frequent cause of hereditary disease?

20 June 2018

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Scinderin, a Ca2+-dependent actin filament severing protein that controls cortical actin network dynamics during secretion

20 June 2018

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Association analysis of the NrCAM gene in autism and in subsets of families with severe obsessive-compulsive or self-stimulatory behaviors

20 June 2018

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Three novel alternatively spliced isoforms of the human beta-site amyloid precursor protein cleaving enzyme (BACE) and their effect on amyloid beta-peptide production

21 January 2018

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Quantification and distribution of beta-secretase alternative splice variants in the rat and human brain

21 January 2018

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High levels of Alzheimer beta-amyloid precursor protein (APP) in children with severely autistic behavior and aggression

21 January 2018

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10.1371/JOURNAL.PONE.0079448

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24260225%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24260225%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

PubMed publication ID

24260225

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24260225%20AND%20SRC:MED&resulttype=core&format=json