SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation. (Q30702540)

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English	SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation.	scientific article

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scholarly article

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10 November 2019

SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation (English)

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Europe PubMed Central

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10 November 2019

whole genome sequencing

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inferred from title

1

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10 November 2019

2

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10 November 2019

author name string

James W Posakony

3

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publication date

9 July 2002

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10 November 2019

number of pages

6

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Proceedings of the National Academy of Sciences of the United States of America

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10 November 2019

99

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10 November 2019

15

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10 November 2019

9888-9893

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Europe PubMed Central

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10 November 2019

Molecular analysis of the neurogenic locus Enhancer of split of Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

A genomewide survey of basic helix-loop-helix factors in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Comparative analysis of the human and mouse Hey1 promoter: Hey genes are new Notch target genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

The enhancer of split complex of Drosophila includes four Notch-regulated members of the bearded gene family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Groucho/TLE family proteins and transcriptional repression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

The genome sequence of Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Repression by suppressor of hairless and activation by Notch are required to define a single row of single-minded expressing cells in the Drosophila embryo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

The mesoderm determinant snail collaborates with related zinc-finger proteins to control Drosophila neurogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Discrete enhancer elements mediate selective responsiveness of enhancer of split complex genes to common transcriptional activators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Muscle pattern diversification in Drosophila: the story of imaginal myogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Notch signaling: cell fate control and signal integration in development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

The K box, a conserved 3' UTR sequence motif, negatively regulates accumulation of enhancer of split complex transcripts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Regulation of Drosophila neurogenesis by RNA:RNA duplexes?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

The myogenic regulatory gene Mef2 is a direct target for transcriptional activation by Twist during Drosophila myogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Synergy between suppressor of Hairless and Notch in regulation of Enhancer of split m gamma and m delta expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Specificity of CNS and PNS regulatory subelements comprising pan-neural enhancers of the deadpan and scratch genes is achieved by repression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Recognition sequence of a highly conserved DNA binding protein RBP-J kappa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Structure and regulation of a complex locus: the cut gene of Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Cells with persistent twist expression are the embryonic precursors of adult muscles in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Suppressor of Hairless, the Drosophila homolog of the mouse recombination signal-binding protein gene, controls sensory organ cell fates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

20 June 2018

Suppressor of hairless directly activates transcription of enhancer of split complex genes in response to Notch receptor activity

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.152320899

21 January 2018

The suppressor of hairless protein participates in notch receptor signaling

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.152320899

21 January 2018

A notch-independent activity of suppressor of hairless is required for normal mechanoreceptor physiology

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.152320899

21 January 2018

The neurogenic suppressor of hairless DNA-binding protein mediates the transcriptional activation of the enhancer of split complex genes triggered by Notch signaling.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.152320899

21 January 2018

The Drosophila rhomboid gene mediates the localized formation of wing veins and interacts genetically with components of the EGF-R signaling pathway

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.152320899

21 January 2018

Distinct expression patterns of different enhancer of split bHLH genes during embryogenesis of Drosophila melanogaster.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.152320899

21 January 2018

Cell-type specific modular regulation of derailed in the Drosophila nervous system.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.152320899

21 January 2018

Dynamic expression of Drosophila TRAF1 during embryogenesis and larval development.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.152320899

21 January 2018

GFP and beta-galactosidase transformation vectors for promoter/enhancer analysis in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

25 November 2018

Antagonism of notch signaling activity by members of a novel protein family encoded by the bearded and enhancer of split gene complexes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

25 November 2018

The Bearded box, a novel 3' UTR sequence motif, mediates negative post-transcriptional regulation of Bearded and Enhancer of split Complex gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

25 November 2018

The Notch signalling pathway is required for Enhancer of split bHLH protein expression during neurogenesis in the Drosophila embryo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125053

25 November 2018

Identifiers

10.1073/PNAS.152320899

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Europe PubMed Central

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10 November 2019

2002PNAS...99.9888R

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1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12107285%20AND%20SRC:MED&resulttype=core&format=json

10 November 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12107285%20AND%20SRC:MED&resulttype=core&format=json

10 November 2019

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