The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again (Q30763296)

11 September 2017

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again (English)

1 reference

inferred from name or label

11 September 2017

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1 reference

Alejandra González-Beltrán

7 September 2021

author

1

1 reference

PubMed ID

24564732

26 June 2017

Susanna-Assunta Sansone

4

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Philippe Rocca-Serra

5

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Steffen Neumann

2

object named as

Steffen Neumann

1 reference

11 September 2017

3

Eamonn Maguire

1 reference

11 September 2017

language of work or name

1 reference

10 January 2014

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11 September 2017

1 reference

11 September 2017

15 Suppl 1

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11 September 2017

S11

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describes a project that uses

11 September 2017

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

affy

object named as

affy package

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-15-s7-s11

reason for deprecated rank

incorrect value

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https://scigraph.springernature.com/pub.10.1186/1471-2105-15-s1-s11

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cites work

OntoMaton: a bioportal powered ontology widget for Google Spreadsheets

1 reference

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The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015122

ArrayExpress update--trends in database growth and links to data analysis tools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015122

NCBI GEO: archive for functional genomics data sets--update

20 June 2018

1 reference

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MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

20 June 2018

1 reference

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Toward interoperable bioscience data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015122

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons

20 June 2018

1 reference

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CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets

20 June 2018

1 reference

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BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

20 June 2018

1 reference

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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015122

Differential expression analysis for sequence count data

20 June 2018

1 reference

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The European Nucleotide Archive

20 June 2018

1 reference

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mzML--a community standard for mass spectrometry data

20 June 2018

1 reference

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ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

20 June 2018

1 reference

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Modeling biomedical experimental processes with OBI

20 June 2018

1 reference

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The Wnt/beta-catenin pathway is required for the development of leukemia stem cells in AML.

20 June 2018

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The minimum information about a proteomics experiment (MIAPE)

20 June 2018

1 reference

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A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

20 June 2018

1 reference

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XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

20 June 2018

1 reference

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The MGED Ontology: a resource for semantics-based description of microarray experiments

20 June 2018

1 reference

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Assignment of endogenous substrates to enzymes by global metabolite profiling

20 June 2018

1 reference

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Bioconductor: open software development for computational biology and bioinformatics

20 June 2018

1 reference

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affy--analysis of Affymetrix GeneChip data at the probe level

20 June 2018

1 reference

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Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

20 June 2018

1 reference

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BATMAN--an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model.

20 June 2018

1 reference

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The open source ISA software suite and its international user community: knowledge management of experimental data

25 November 2018

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1186/1471-2105-15-S1-S11

Nearline acquisition and processing of liquid chromatography-tandem mass spectrometry data

2 references

5 May 2024

https://opencitations.net/index/api/v1/references/10.1186/1471-2105-15-S1-S11

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1007/S11306-012-0401-0

Identifiers

DOI

10.1186/1471-2105-15-S7-S11

reason for deprecated rank

incorrect identifier value

1 reference

10.1186/1471-2105-15-S1-S11

11 September 2017

0 references

DBLP publication ID

journals/bmcbi/BeltranNMSR14

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1018299588

reason for deprecated rank

incorrect identifier value

0 references

0 references

1 reference

11 September 2017

1 reference