Efficient RNA isoform identification and quantification from RNA-Seq data with network flows. (Q30817919)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24813214%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

title

Efficient RNA isoform identification and quantification from RNA-Seq data with network flows (English)

1 reference

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17 March 2020

1 reference

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4

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17 March 2020

3

Julien Mairal

1 reference

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17 March 2020

author name string

Elsa Bernard

series ordinal

1

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17 March 2020

Laurent Jacob

series ordinal

2

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17 March 2020

language of work or name

English

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publication date

9 May 2014

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17 March 2020

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17 March 2020

volume

30

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17 March 2020

issue

17

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17 March 2020

page(s)

2447-2455

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Creative Commons Attribution 3.0 Unported

17 March 2020

copyright license

start time

9 May 2014

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

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cites work

MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples

1 reference

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A novel min-cost flow method for estimating transcript expression with RNA-Seq

21 June 2018

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A robust method for transcript quantification with RNA-seq data.

21 June 2018

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iReckon: simultaneous isoform discovery and abundance estimation from RNA-seq data

21 June 2018

1 reference

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Modelling and simulating generic RNA-Seq experiments with the flux simulator

21 June 2018

1 reference

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Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation

21 June 2018

1 reference

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IsoLasso: a LASSO regression approach to RNA-Seq based transcriptome assembly

21 June 2018

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FDM: a graph-based statistical method to detect differential transcription using RNA-seq data

21 June 2018

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NSMAP: a method for spliced isoforms identification and quantification from RNA-Seq.

21 June 2018

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Scaffolding a Caenorhabditis nematode genome with RNA-seq

21 June 2018

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rQuant.web: a tool for RNA-Seq-based transcript quantitation

21 June 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 June 2018

1 reference

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Transcriptome genetics using second generation sequencing in a Caucasian population

21 June 2018

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Maximum likelihood genome assembly

21 June 2018

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TopHat: discovering splice junctions with RNA-Seq

21 June 2018

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Statistical inferences for isoform expression in RNA-Seq

21 June 2018

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

21 June 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 June 2018

1 reference

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An expectation-maximization algorithm for probabilistic reconstructions of full-length isoforms from splice graphs

21 June 2018

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Gene expression profiling predicts clinical outcome of breast cancer

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147886

Molecular portraits of human breast tumours

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147886

Splicing graphs and EST assembly problem

21 June 2018

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Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU317

Estimating the Dimension of a Model

21 January 2018

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Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU317

An Efficient Implementation of a Scaling Minimum-Cost Flow Algorithm

21 January 2018

1 reference

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU317

10.1093/BIOINFORMATICS/BTU317

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24813214%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/BernardJMV14

17 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24813214%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24813214%20AND%20SRC:MED&resulttype=core&format=json