Detecting concerted demographic response across community assemblages using hierarchical approximate Bayesian computation (Q30830895)

7 November 2017

Detecting concerted demographic response across community assemblages using hierarchical approximate Bayesian computation (English)

1 reference

approximate Bayesian computation

7 November 2017

0 references

1 reference

3

Michael J Hickerson

1 reference

7 November 2017

Yvonne L Chan

1

1 reference

PMC publication ID

4137712

7 November 2017

David Schanzenbach

series ordinal

2

1 reference

7 November 2017

12 June 2014

1 reference

Molecular Biology and Evolution

7 November 2017

1 reference

7 November 2017

31

1 reference

7 November 2017

9

1 reference

7 November 2017

2501-2515

1 reference

Perched at the mito-nuclear crossroads: divergent mitochondrial lineages correlate with environment in the face of ongoing nuclear gene flow in an Australian bird

7 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Approximate Bayesian computation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Comparative phylogeography in Fijian coral reef fishes: a multi-taxa approach towards marine reserve design

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

A species assemblage approach to comparative phylogeography of birds in southern Australia

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Reconstructing community assembly in time and space reveals enemy escape in a Western Palearctic insect community

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Species-specific responses of Late Quaternary megafauna to climate and humans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Lack of confidence in approximate Bayesian computation model choice

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Phylogeny, phylogeography, phylobetadiversity and the molecular analysis of biological communities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Skyline-plot methods for estimating demographic history from nucleotide sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

MTML-msBayes: approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Climate change and evolutionary adaptations at species' range margins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Multilocus analysis of honeyeaters (Aves: Meliphagidae) highlights spatio-temporal heterogeneity in the influence of biogeographic barriers in the Australian monsoonal zone

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

ABC as a flexible framework to estimate demography over space and time: some cons, many pros

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Approximate Bayesian Computation (ABC) in practice.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Likelihood-free inference of population structure and local adaptation in a Bayesian hierarchical model

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Phylogeography's past, present, and future: 10 years after Avise, 2000.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Testing comparative phylogeographic models of marine vicariance and dispersal using a hierarchical Bayesian approach

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Phylogeography of post-Pleistocene population expansion in a fungus-gardening ant and its microbial mutualists

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Phylogenetic analysis of community assembly and structure over space and time

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

BARCODING: bold: The Barcode of Life Data System (http://www.barcodinglife.org)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Where and when does a ring start and end? Testing the ring-species hypothesis in a species complex of Australian parrots

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Population size does not influence mitochondrial genetic diversity in animals

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Phylogeography of an east Australian wet-forest bird, the satin bowerbird (Ptilonorhynchus violaceus), derived from mtDNA, and its relationship to morphology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Assessing the Causes of Late Pleistocene Extinctions on the Continents

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

The Bayesian revolution in genetics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Intra-deme molecular diversity in spatially expanding populations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Reconciling genetic expectations from host specificity with historical population dynamics in an avian brood parasite, Horsfield's Bronze-Cuckoo Chalcites basalis of Australia

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Is the population size of a species relevant to its evolution?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Evolutionary consequences of changes in species' geographical distributions driven by Milankovitch climate oscillations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

The genetic legacy of the Quaternary ice ages

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Comparative Phylogeography of Mesoamerican Highland Rodents: Concerted versus Independent Response to Past Climatic Fluctuations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Population growth of human Y chromosomes: a study of Y chromosome microsatellites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Abrupt climate oscillations during the last deglaciation in central north america

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Comparative phylogeography and postglacial colonization routes in Europe

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Maximum likelihood estimation of population growth rates based on the coalescent

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Inferring coalescence times from DNA sequence data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Spatial Response of Mammals to Late Quaternary Environmental Fluctuations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Population growth makes waves in the distribution of pairwise genetic differences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Serial SimCoal: a population genetics model for data from multiple populations and points in time

28 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Approximate Bayesian Computation in Evolution and Ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

abc: an R package for approximate Bayesian computation (ABC)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Range shifts and adaptive responses to Quaternary climate change

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

IS THE POPULATION SIZE OF A SPECIES RELEVANT TO ITS EVOLUTION?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

The confounding effect of population structure on Bayesian skyline plot inferences of demographic history.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Genetic consequences of climatic oscillations in the Quaternary

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Recommendations for using msBayes to incorporate uncertainty in selecting an abc model prior: a response to oaks et Al.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Rethinking Community Assembly through the Lens of Coexistence Theory

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Colonization and/or mitochondrial selective sweeps across the North Atlantic intertidal assemblage revealed by multi-taxa approximate Bayesian computation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Molecular resolution of population history, systematics and historical biogeography of the Australian ringneck parrots Barnardius: are we there yet?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

The impact of Pleistocene changes of climate and landscape on Australian birds: a test using the Pied Butcherbird ( Cracticus nigrogularis )

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Testing the effect of transient Plio-Pleistocene barriers in monsoonal Australo-Papua: did mangrove habitats maintain genetic connectivity in the Black Butcherbird?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Divergence across Australia's Carpentarian barrier: statistical phylogeography of the red-backed fairy wren (Malurus melanocephalus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Speciation in chestnut-shouldered fairy-wrens (Malurus spp.) and rapid phenotypic divergence in variegated fairy-wrens (Malurus lamberti): a multilocus approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Comparative phylogeography reveals a shared impact of pleistocene environmental change in shaping genetic diversity within nine Anopheles mosquito species across the Indo-Burma biodiversity hotspot

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

A cryptic and critically endangered species revealed by mitochondrial DNA analyses: the Western Ground Parrot

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Strong variations of mitochondrial mutation rate across mammals--the longevity hypothesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

340,000-year centennial-scale marine record of Southern Hemisphere climatic oscillation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

The effect of historical legacy on adaptation: do closely related species respond to the environment in the same way?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Comparative phylogeography of unglaciated eastern North America

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Evolution of arid zone birds in Australia: leapfrog distribution patterns and mesic-arid connections in quail-thrush (Cinclosoma, Cinclosomatidae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Advances, challenges and a developing synthesis of ecological community assembly theory

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Comparative phylogeography reveals deep lineages and regional evolutionary hotspots in the Mojave and Sonoran Deserts

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Marine isotope stage 3 sea level fluctuations: Data synthesis and new outlook

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU187

Test for simultaneous divergence using approximate Bayesian computation

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137712

Population genetic structure of Australian magpies: evidence for regional differences in juvenile dispersal behaviour

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24925925

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

MITOCHONDRIAL GENE GENEALOGY AND GENE FLOW AMONG ISLAND AND MAINLAND POPULATIONS OF A SEDENTARY SONGBIRD, THE GREY-CROWNED BABBLER (POMATOSTOMUS TEMPORALIS).

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24925925

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/MOLBEV/MSU187

1 reference

7 November 2017

1 reference

PMC publication ID

4137712

7 November 2017

PubMed publication ID

24925925

1 reference

PMC publication ID

4137712