MORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules (Q30837902)

12 August 2017

MORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules (English)

1 reference

12 August 2017

probabilistic modeling

0 references

1

Saurabh Sinha

1 reference

12 August 2017

2

Xin He

1 reference

12 August 2017

24 September 2007

1 reference

PLOS Computational Biology

12 August 2017

1 reference

12 August 2017

3

1 reference

12 August 2017

11

1 reference

12 August 2017

e216

1 reference

Creative Commons Attribution 4.0 International

12 August 2017

start time

9 November 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Sequence turnover and tandem repeats in cis-regulatory modules in drosophila

21 June 2018

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21 June 2018

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21 June 2018

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Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila

21 June 2018

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Transcriptional control in the segmentation gene network of Drosophila

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Conservation of regulatory elements between two species of Drosophila

21 June 2018

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21 June 2018

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Distinguishing regulatory DNA from neutral sites

21 June 2018

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Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo

21 June 2018

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Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model

21 June 2018

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A genomic regulatory network for development

21 June 2018

1 reference

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Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

21 June 2018

1 reference

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Detection of cis-element clusters in higher eukaryotic DNA.

21 June 2018

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Evolutionary HMMs: a Bayesian approach to multiple alignment

21 June 2018

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21 June 2018

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DNA binding sites: representation and discovery

21 June 2018

1 reference

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21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065892

Dynamic programming alignment accuracy

21 June 2018

1 reference

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21 June 2018

1 reference

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A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 June 2018

1 reference

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21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065892

An evolutionary model for maximum likelihood alignment of DNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065892

Aligning two sequences within a specified diagonal band

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065892

DNA assembly with gaps (Dawg): simulating sequence evolution.

21 June 2018

1 reference

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25 November 2018

1 reference

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Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065892

A probabilistic method to detect regulatory modules.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065892

Sequence alignments and pair hidden Markov models using evolutionary history

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17997594

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.0030216

1 reference

12 August 2017

journals/ploscb/SinhaH07

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

12 August 2017

1 reference

PMCID

2065892