Nucleotide excision repair in yeast (Q30890380)

27 June 2017

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title

Nucleotide excision repair in yeast (English)

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nucleotide-excision repair factor 1 complex

27 June 2017

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nucleotide-excision repair complex

GO:0000110

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nucleotide-excision repair factor 4 complex

GO:0000109

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nucleotide-excision repair factor 3 complex

GO:0000113

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nucleotide-excision repair factor 2 complex

GO:0000112

1 reference

S Prakash

1

1 reference

PubMed ID

10915862

27 June 2017

L Prakash

series ordinal

2

1 reference

PubMed ID

10915862

27 June 2017

language of work or name

English

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publication date

1 June 2000

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27 June 2017

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27 June 2017

451

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27 June 2017

1-2

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27 June 2017

13-24

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Genetic control of excision of Saccharomyces cerevisiae interstrand DNA cross-links induced by psoralen plus near-UV light

27 June 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Yeast RAD14 and human xeroderma pigmentosum group A DNA-repair genes encode homologous proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

RAD25 (SSL2), the yeast homolog of the human xeroderma pigmentosum group B DNA repair gene, is essential for viability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Three additional genes involved in pyrimidine dimer removal in Saccharomyces cerevisiae: RAD7, RAD14 and MMS19

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Defective excision of pyrimidine dimers and interstrand DNA crosslinks in rad7 and rad23 mutants of Saccharomyces cerevisiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

DNA repair genes and proteins of Saccharomyces cerevisiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Cloning and nucleotide sequence analysis of the Saccharomyces cerevisiae RAD4 gene required for excision repair of UV-damaged DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The residual repair capacity of xeroderma pigmentosum complementation group C fibroblasts is highly specific for transcriptionally active DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Repair of plasmid and genomic DNA in a rad7 delta mutant of yeast

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Assessing the requirements for nucleotide excision repair proteins of Saccharomyces cerevisiae in an in vitro system

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The RAD7, RAD16, and RAD23 genes of Saccharomyces cerevisiae: requirement for transcription-independent nucleotide excision repair in vitro and interactions between the gene products

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The yeast RAD7 and RAD16 genes are required for postincision events during nucleotide excision repair. In vitro and in vivo studies with rad7 and rad16 mutants and purification of a Rad7/Rad16-containing protein complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Preferential DNA repair of an active gene in human cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Cockayne syndrome: Review of 140 cases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The genetic defect in Cockayne syndrome is associated with a defect in repair of UV-induced DNA damage in transcriptionally active DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Deficient repair of the transcribed strand of active genes in Cockayne's syndrome cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The Cockayne syndrome group A gene encodes a WD repeat protein that interacts with CSB protein and a subunit of RNA polymerase II TFIIH

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Molecular cloning and characterization of Saccharomyces cerevisiae RAD28, the yeast homolog of the human Cockayne syndrome A (CSA) gene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Human nucleotide excision nuclease removes thymine dimers from DNA by incising the 22nd phosphodiester bond 5' and the 6th phosphodiester bond 3' to the photodimer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Analysis of a human DNA excision repair gene involved in group A xeroderma pigmentosum and containing a zinc-finger domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Yeast DNA-repair gene RAD14 encodes a zinc metalloprotein with affinity for ultraviolet-damaged DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Implications of the zinc-finger motif found in the DNA-binding domain of the human XPA protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Preferential binding of the xeroderma pigmentosum group A complementing protein to damaged DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Replication protein A: a heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Reconstitution of yeast nucleotide excision repair with purified Rad proteins, replication protein A, and transcription factor TFIIH.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Reconstitution of human DNA repair excision nuclease in a highly defined system

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

RPA involvement in the damage-recognition and incision steps of nucleotide excision repair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

An affinity of human replication protein A for ultraviolet-damaged DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

DNA repair protein XPA binds replication protein A (RPA).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

An interaction between the DNA repair factor XPA and replication protein A appears essential for nucleotide excision repair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Affinity of yeast nucleotide excision repair factor 2, consisting of the Rad4 and Rad23 proteins, for ultraviolet damaged DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Preferential binding of yeast Rad4.Rad23 complex to damaged DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Overproduction, purification, and characterization of the XPC subunit of the human DNA repair excision nuclease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Xeroderma pigmentosum group C protein complex is the initiator of global genome nucleotide excision repair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Yeast Rad7-Rad16 complex, specific for the nucleotide excision repair of the nontranscribed DNA strand, is an ATP-dependent DNA damage sensor

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The DNA-dependent ATPase activity of yeast nucleotide excision repair factor 4 and its role in DNA damage recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

RAD3 protein of Saccharomyces cerevisiae is a DNA helicase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Human xeroderma pigmentosum group D gene encodes a DNA helicase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

RAD25 is a DNA helicase required for DNA repair and RNA polymerase II transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The ERCC2/DNA repair protein is associated with the class II BTF2/TFIIH transcription factor

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The RAD3 gene of Saccharomyces cerevisiae encodes a DNA-dependent ATPase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Dual roles of a multiprotein complex from S. cerevisiae in transcription and DNA repair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Relationship of CDK-activating kinase and RNA polymerase II CTD kinase TFIIH/TFIIK

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Reconstitution of TFIIH and requirement of its DNA helicase subunits, Rad3 and Rad25, in the incision step of nucleotide excision repair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Reaction mechanism of human DNA repair excision nuclease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Specific complex formation between proteins encoded by the yeast DNA repair and recombination genes RAD1 and RAD10

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Stable and specific association between the yeast recombination and DNA repair proteins RAD1 and RAD10 in vitro

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Yeast DNA repair and recombination proteins Rad1 and Rad10 constitute a single-stranded-DNA endonuclease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Specific cleavage of model recombination and repair intermediates by the yeast Rad1-Rad10 DNA endonuclease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Purification and characterization of the XPF-ERCC1 complex of human DNA repair excision nuclease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Yeast excision repair gene RAD2 encodes a single-stranded DNA endonuclease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Functional domains within FEN-1 and RAD2 define a family of structure-specific endonucleases: implications for nucleotide excision repair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Enzymes and reactions at the eukaryotic DNA replication fork

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Structure-specific endonucleolytic cleavage of nucleic acids by eubacterial DNA polymerases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Structure-specific nuclease activity in yeast nucleotide excision repair protein Rad2.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

XPG endonuclease makes the 3' incision in human DNA nucleotide excision repair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Isolation and characterization of the RAD3 gene of Saccharomyces cerevisiae and inviability of rad3 deletion mutants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

A DNA repair gene required for the incision of damaged DNA is essential for viability in Saccharomyces cerevisiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

SSL2, a suppressor of a stem-loop mutation in the HIS4 leader encodes the yeast homolog of human ERCC-3

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

DNA repair helicase: a component of BTF2 (TFIIH) basic transcription factor

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The Saccharomyces cerevisiae DNA repair gene RAD25 is required for transcription by RNA polymerase II

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

DNA repair gene RAD3 of S. cerevisiae is essential for transcription by RNA polymerase II

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The Schizosaccharomyces pombe rhp3+ gene required for DNA repair and cell viability is functionally interchangeable with the RAD3 gene of Saccharomyces cerevisiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Lethality in yeast of trichothiodystrophy (TTD) mutations in the human xeroderma pigmentosum group D gene. Implications for transcriptional defect in TTD.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

RAD1, an excision repair gene of Saccharomyces cerevisiae, is also involved in recombination

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

RAD10, an excision repair gene of Saccharomyces cerevisiae, is involved in the RAD1 pathway of mitotic recombination

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Genome rearrangement in top3 mutants of Saccharomyces cerevisiae requires a functional RAD1 excision repair gene

7 January 2021

2 references

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

7 January 2021

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

inferred from DOI database lookup

7 January 2021

based on heuristic

RAD1 and RAD10, but not other excision repair genes, are required for double-strand break-induced recombination in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Role of Saccharomyces cerevisiae Msh2 and Msh3 repair proteins in double-strand break-induced recombination

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Repair of DNA loops involves DNA-mismatch and nucleotide-excision repair proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Mice with DNA repair gene (ERCC-1) deficiency have elevated levels of p53, liver nuclear abnormalities and die before weaning

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Disruption of mouse ERCC1 results in a novel repair syndrome with growth failure, nuclear abnormalities and senescence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Mammalian DNA nucleotide excision repair reconstituted with purified protein components.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Different forms of TFIIH for transcription and DNA repair: holo-TFIIH and a nucleotide excision repairosome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Nucleotide excision repair in yeast is mediated by sequential assembly of repair factors and not by a pre-assembled repairosome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Transcription factor TFIIH and DNA endonuclease Rad2 constitute yeast nucleotide excision repair factor 3: implications for nucleotide excision repair and Cockayne syndrome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Purification and cloning of a nucleotide excision repair complex involving the xeroderma pigmentosum group C protein and a human homologue of yeast RAD23

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Synergistic interaction between yeast nucleotide excision repair factors NEF2 and NEF4 in the binding of ultraviolet-damaged DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Order of assembly of human DNA repair excision nuclease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Assembly, subunit composition, and footprint of human DNA repair excision nuclease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

RAD26, the yeast homolog of human Cockayne's syndrome group B gene, encodes a DNA-dependent ATPase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Human transcription-repair coupling factor CSB/ERCC6 is a DNA-stimulated ATPase but is not a helicase and does not disrupt the ternary transcription complex of stalled RNA polymerase II

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

RNA polymerase II stalled at a thymine dimer: footprint and effect on excision repair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Cockayne syndrome group B protein enhances elongation by RNA polymerase II

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Transitions in the coupling of transcription and nucleotide excision repair within RNA polymerase II-transcribed genes of Saccharomyces cerevisiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Sequence-specific and domain-specific DNA repair in xeroderma pigmentosum and Cockayne syndrome cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The Saccharomyces cerevisiae DNA repair gene RAD23 encodes a nuclear protein containing a ubiquitin-like domain required for biological function

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The regulatory particle of the Saccharomyces cerevisiae proteasome.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Rad23 links DNA repair to the ubiquitin/proteasome pathway

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

The 19S Regulatory Complex of the Proteasome Functions Independently of Proteolysis in Nucleotide Excision Repair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

Dual requirement for the yeast MMS19 gene in DNA repair and RNA polymerase II transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2800%2900037-3

10.1016/S0027-5107(00)00037-3

7 January 2021

Identifiers

DOI

1 reference

27 June 2017

1 reference

PubMed ID

10915862