A molecular dynamics simulation study of polyamine- and sodium-DNA. Interplay between polyamine binding and DNA structure. (Q30931915)

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28 December 2019

title

A molecular dynamics simulation study of polyamine- and sodium-DNA. Interplay between polyamine binding and DNA structure (English)

1 reference

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molecular dynamics simulation

28 December 2019

main subject

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author

Alexander P Lyubartsev

2

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28 December 2019

Aatto Laaksonen

3

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28 December 2019

author name string

Nikolay Korolev

1

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28 December 2019

Lars Nordenskiöld

4

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28 December 2019

publication date

14 May 2004

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European Biophysics Journal

28 December 2019

published in

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

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volume

33

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28 December 2019

issue

8

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28 December 2019

page(s)

671-682

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Crystal structure of the nucleosome core particle at 2.8 A resolution

28 December 2019

cites work

1 reference

12 December 2020

A molecular dynamics simulation study of oriented DNA with polyamine and sodium counterions: diffusion and averaged binding of water and cations.

1 reference

12 December 2020

The origin of the A to B transition in DNA fibers and films

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12 December 2020

Molecular dynamics simulations of DNA in solutions with different counter-ions.

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12 December 2020

Structure of a B-DNA dodecamer. III. Geometry of hydration

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12 December 2020

Influence of the dynamic positions of cations on the structure of the DNA minor groove: sequence-dependent effects

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12 December 2020

Electrostatic mechanisms of DNA deformation

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12 December 2020

1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium

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12 December 2020

DNA binding within the nucleosome core

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12 December 2020

DNA-cation interactions: quo vadis?

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12 December 2020

On the competition between water, sodium ions, and spermine in binding to DNA: a molecular dynamics computer simulation study

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12 December 2020

Z-DNA crystallography .

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12 December 2020

DNA structure: cations in charge?

1 reference

12 December 2020

Polyamine-nucleic acid interactions and the effects on structure in oriented DNA fibers

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12 December 2020

Molecular dynamics simulations of the d(CCAACGTTGG)(2) decamer: influence of the crystal environment.

1 reference

12 December 2020

Polyamines in cell growth and cell death: molecular mechanisms and therapeutic applications

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12 December 2020

Molecular dynamics simulation study of oriented polyamine- and Na-DNA: sequence specific interactions and effects on DNA structure

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12 December 2020

Localisation and dynamics of sodium counterions around DNA in solution from molecular dynamics simulation

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12 December 2020

Measuring the geometry of DNA grooves.

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12 December 2020

Mechanisms of DNA bending

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12 December 2020

Crystallization of DNA

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12 December 2020

Molecular-dynamics study of atomic motions in water

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12 December 2020

Spermine: an "invisible" component in the crystals of B-DNA. A grand canonical Monte Carlo and molecular dynamics simulation study

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12 December 2020

Locating monovalent cations in the grooves of B-DNA

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12 December 2020

Polyamines: mysterious modulators of cellular functions

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12 December 2020

Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations

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12 December 2020

Conformational transitions of the phosphodiester backbone in native DNA: two-dimensional magic-angle-spinning 31P-NMR of DNA fibers

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12 December 2020

DNA structure: what's in charge?

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12 December 2020

Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending

1 reference

12 December 2020

Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G

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12 December 2020

Bending of DNA by asymmetric charge neutralization: all-atom energy simulations

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12 December 2020

An estimate of the extent of folding of nucleosomal DNA by laterally asymmetric neutralization of phosphate groups

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12 December 2020

10.1007/S00249-004-0410-7

Identifiers

DOI

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28 December 2019

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