Integration of gene expression data into genome-scale metabolic models (Q30970854)

27 June 2017

Integration of gene expression data into genome-scale metabolic models (English)

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27 June 2017

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3

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27 June 2017

Mats Akesson

1

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PubMed ID

15491858

27 June 2017

Jochen Förster

series ordinal

2

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27 June 2017

1 October 2004

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27 June 2017

Metabolic Engineering

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27 June 2017

6

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27 June 2017

4

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27 June 2017

285-293

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27 June 2017

Synthetic cell biology

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https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Probing the performance limits of the Escherichia coli metabolic network subject to gene additions or deletions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Metabolic network analysis of Penicillium chrysogenum using (13)C-labeled glucose

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Transcriptional regulation in constraints-based metabolic models of Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Regulation of gene expression in flux balance models of metabolism

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

The Saccharomyces cerevisiae TCM62 gene encodes a chaperone necessary for the assembly of the mitochondrial succinate dehydrogenase (complex II).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Systems properties of the Haemophilus influenzae Rd metabolic genotype

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Fat synthesis in adipose tissue. An examination of stoichiometric constraints

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Mathematical modelling of metabolism

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Correlation between protein and mRNA abundance in yeast

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Inverse regulation of the yeast COX5 genes by oxygen and heme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

A new approach to decoding life: systems biology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Discovering regulatory and signalling circuits in molecular interaction networks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Feasting, fasting and fermenting. Glucose sensing in yeast and other cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Identification of a third nuclear protein-coding gene required specifically for posttranscriptional expression of the mitochondrial COX3 gene is Saccharomyces cerevisiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

MIPS: a database for genomes and protein sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

An expanded role for microbial physiology in metabolic engineering and functional genomics: moving towards systems biology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Flux distributions in anaerobic, glucose-limited continuous cultures of Saccharomyces cerevisiae.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

A single amino acid change in subunit 6 of the yeast mitochondrial ATPase suppresses a null mutation in ATP10

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Glucose repression in fungi

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Genome-scale metabolic model of Helicobacter pylori 26695.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Analysis of optimality in natural and perturbed metabolic networks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Network motifs in the transcriptional regulation network of Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Metabolic network structure determines key aspects of functionality and regulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Characterization of null mutants of the glyoxylate cycle and gluconeogenic enzymes in S. cerevisiae through metabolic network modeling verified by chemostat cultivation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Transcriptome meets metabolome: hierarchical and metabolic regulation of the glycolytic pathway

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

mRNA degradation machines in eukaryotic cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Physiology of Saccharomyces cerevisiae in anaerobic glucose-limited chemostat cultures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Integration of the information from gene expression and metabolic fluxes for the analysis of the regulatory mechanisms in Synechocystis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

inferred from DOI database lookup

7 January 2021

based on heuristic

Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates.

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2003.12.002

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/J.YMBEN.2003.12.002

1 reference

27 June 2017

1 reference

PubMed ID

15491858