Mining SAGE data allows large-scale, sensitive screening of antisense transcript expression. (Q30977050)

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5 January 2020

title

Mining SAGE data allows large-scale, sensitive screening of antisense transcript expression (English)

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5 January 2020

1

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5 January 2020

Fabien Pierrat

5

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5 January 2020

Therese Commes

7

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5 January 2020

David Piquemal

8

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2

Laurent Manchon

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5 January 2020

author name string

Mireille Lejeune

3

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5 January 2020

Oliver Clément

4

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5 January 2020

Béatrice Bonafoux

6

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5 January 2020

Jacques Marti

9

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5 January 2020

language of work or name

English

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publication date

23 November 2004

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5 January 2020

published in

Nucleic Acids Research

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5 January 2020

volume

32

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5 January 2020

issue

20

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5 January 2020

page(s)

e163

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Overlapping antisense transcription in the human genome

5 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Over 20% of human transcripts might form sense-antisense pairs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

14 July 2018

In search of antisense

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Systematic identification of sense-antisense transcripts in mammalian cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling

14 July 2018

1 reference

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Antisense transcripts with FANTOM2 clone set and their implications for gene regulation

14 July 2018

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Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease

14 July 2018

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Widespread occurrence of antisense transcription in the human genome

14 July 2018

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14 July 2018

Mammalian retroelements.

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Computational discovery of sense-antisense transcription in the human and mouse genomes

14 July 2018

1 reference

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Transcriptome analysis of monocytic leukemia cell differentiation.

14 July 2018

1 reference

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An anatomy of normal and malignant gene expression

14 July 2018

1 reference

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Long-range heterogeneity at the 3' ends of human mRNAs

14 July 2018

1 reference

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Using the transcriptome to annotate the genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Antisense transcripts in the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Serial analysis of gene expression in Plasmodium falciparum reveals the global expression profile of erythrocytic stages and the presence of anti-sense transcripts in the malarial parasite

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans.

14 July 2018

1 reference

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Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Repbase update: a database and an electronic journal of repetitive elements

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Nature and structure of human genes that generate retropseudogenes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Do natural antisense transcripts make sense in eukaryotes?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Antisense globin RNA in mouse erythroid tissues: structure, origin, and possible function

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Serial analysis of gene expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

Widespread distribution of antisense transcripts in the Plasmodium falciparum genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534641

The mechanism of removal of leukocytes by cellulose columns

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15561998

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Phenotyping autologous red cells within 1 day after allogeneic blood transfusion by using immunomagnetic isolation of reticulocytes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15561998

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cardiac troponin I sense-antisense RNA duplexes in the myocardium

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15561998

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GNH161

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15561998%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15561998%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

PubMed publication ID

15561998

1 reference