Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins (Q30981967)

14 August 2017

Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins (English)

1 reference

Pernilla Wittung-Stafshede

14 August 2017

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28

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PubMed publication ID

28 June 2017

3

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Aled Edwards

17

Aled M Edwards

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Claire T. Friel

Claire T Friel

6

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Francesco Bemporad

Francesco Bemporad

13

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Kaare Teilum

Kaare Teilum

15

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Birthe B. Kragelund

Birthe B Kragelund

20

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Daniel P Raleigh

Daniel P Raleigh

27

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Kevin W Plaxco

Kevin W Plaxco

34

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Sheena Radford

29

Sheena E Radford

1 reference

14 August 2017

31

Tobin R Sosnick

1 reference

14 August 2017

Alexis Vallée-Bélisle

11

Alexis Vallée-Bélisle

1 reference

14 August 2017

21

Stephen W Michnick

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14 August 2017

30

Sophie E Jackson

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14 August 2017

9

Diane Bona

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14 August 2017

Karen L Maxwell

1

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14 August 2017

David Wildes

2

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14 August 2017

Miguel A De Los Rios

4

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14 August 2017

Andrew G Brown

5

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14 August 2017

Linda Hedberg

7

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14 August 2017

Jia-Cherng Horng

8

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14 August 2017

Erik J Miller

10

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14 August 2017

Ewan R G Main

12

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14 August 2017

Linlin Qiu

14

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14 August 2017

Ngoc-Diep Vu

16

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14 August 2017

Ingo Ruczinski

18

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14 August 2017

Flemming M Poulsen

19

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14 August 2017

Fabrizio Chiti

22

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14 August 2017

Yawen Bai

23

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14 August 2017

Stephen J Hagen

24

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14 August 2017

Luis Serrano

25

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14 August 2017

Mikael Oliveberg

26

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14 August 2017

Susan Marqusee

32

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14 August 2017

Alan R Davidson

33

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14 August 2017

2 February 2005

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14 August 2017

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14 August 2017

14

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3

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14 August 2017

602-616

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Apparent Debye-Huckel electrostatic effects in the folding of a simple, single domain protein

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Is an intermediate state populated on the folding pathway of ubiquitin?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Scattered Hammond plots reveal second level of site-specific information in protein folding: phi' (beta++).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Contact order revisited: influence of protein size on the folding rate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: similarities and differences in the folding of homologous proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Smaller and faster: the 20-residue Trp-cage protein folds in 4 micros

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Experimental evaluation of topological parameters determining protein-folding rates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Understanding protein hydrogen bond formation with kinetic H/D amide isotope effects

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Studies of Pseudomonas aeruginosa azurin mutants: cavities in beta-barrel do not affect refolding speed

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Linear extrapolation method of analyzing solvent denaturation curves

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Confirmation of the hierarchical folding of RNase H: a protein engineering study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Structural changes in the transition state of protein folding: alternative interpretations of curved chevron plots

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Rapid folding with and without populated intermediates in the homologous four-helix proteins Im7 and Im9.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Mutagenesis of a buried polar interaction in an SH3 domain: sequence conservation provides the best prediction of stability effects.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Structural characterization of the transition state for folding of muscle acylphosphatase.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Contact order, transition state placement and the refolding rates of single domain proteins.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

The folding kinetics and thermodynamics of the Fyn-SH3 domain.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Folding dynamics of the src SH3 domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Transient aggregates in protein folding are easily mistaken for folding intermediates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Different folding transition states may result in the same native structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Looking for residues involved in the muscle acylphosphatase catalytic mechanism and structural stabilization: role of Asn41, Thr42, and Thr46.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

raf RBD and ubiquitin proteins share similar folds, folding rates and mechanisms despite having unrelated amino acid sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Unification of the folding mechanisms of non-two-state and two-state proteins

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Elimination of a misfolded folding intermediate by a single point mutation

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Refolding out of guanidine hydrochloride is an effective approach for high-throughput structural studies of small proteins

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Transient intermediary states with high and low folding probabilities in the apparent two-state folding equilibrium of ACBP at low pH.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

pH-dependent stability and folding kinetics of a protein with an unusual alpha-beta topology: the C-terminal domain of the ribosomal protein L9.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Im7 folding mechanism: misfolding on a path to the native state

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Characterization of surface antigen from Lyme disease spirochete Borrelia burgdorferi

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Copper binding before polypeptide folding speeds up formation of active (holo) Pseudomonas aeruginosa azurin.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

On the relationship between protein stability and folding kinetics: a comparative study of the N-terminal domains of RNase HI, E. coli and Bacillus stearothermophilus L9.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Global analysis of the effects of temperature and denaturant on the folding and unfolding kinetics of the N-terminal domain of the protein L9.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

How do small single-domain proteins fold?

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

The effect of boundary selection on the stability and folding of the third fibronectin type III domain from human tenascin

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Kinetics of Folding of the IgG Binding Domain of Peptostreptoccocal Protein L

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

The Largest Protein Observed To Fold by Two-State Kinetic Mechanism Does Not Obey Contact-Order Correlation

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279278

Folding pathway of FKBP12 and characterisation of the transition state

25 November 2018

1 reference

12 December 2020

Submillisecond folding of the peripheral subunit-binding domain 1 1Edited by P. E. Wright

1 reference

12 December 2020

Distinguishing between two-state and three-state models for ubiquitin folding

1 reference

12 December 2020

Folding of chymotrypsin inhibitor 2. 2. Influence of proline isomerization on the folding kinetics and thermodynamic characterization of the transition state of folding

1 reference

12 December 2020

Probing the folding mechanism of a leucine zipper peptide by stopped-flow circular dichroism spectroscopy

1 reference

12 December 2020

Identifiers

DOI

10.1110/PS.041205405

1 reference

14 August 2017

1 reference

14 August 2017

PubMed publication ID

15689503

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