Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae. (Q30984768)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20565991%20AND%20SRC:MED&resulttype=core&format=json

6 February 2020

title

Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20565991%20AND%20SRC:MED&resulttype=core&format=json

6 February 2020

Erwinia billingiae

1 reference

Michael Kube

1

1 reference

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6 February 2020

Alexander M Migdoll

2

1 reference

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6 February 2020

Isabel Gehring

3

1 reference

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6 February 2020

Katja Heitmann

4

1 reference

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6 February 2020

Yvonne Mayer

5

1 reference

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6 February 2020

Florian Knaust

7

1 reference

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6 February 2020

Klaus Geider

8

1 reference

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6 February 2020

language of work or name

English

0 references

publication date

22 June 2010

1 reference

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6 February 2020

1 reference

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6 February 2020

volume

11

1 reference

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6 February 2020

page(s)

393

1 reference

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Hypersensitive response and acyl-homoserine lactone production of the fire blight antagonists Erwinia tasmaniensis and Erwinia billingiae

6 February 2020

cites work

1 reference

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The Hrp pathogenicity island of Erwinia amylovora and identification of three novel genes required for systemic infectiondouble dagger

21 June 2018

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A filamentous hemagglutinin-like protein of Xanthomonas axonopodis pv. citri, the phytopathogen responsible for citrus canker, is involved in bacterial virulence

21 June 2018

1 reference

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The type VI secretion system: translocation of effectors and effector-domains

21 June 2018

1 reference

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FimH adhesin of type 1 fimbriae is a potent inducer of innate antimicrobial responses which requires TLR4 and type 1 interferon signalling

21 June 2018

1 reference

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Identification and functional characterization of gene components of Type VI Secretion system in bacterial genomes

21 June 2018

1 reference

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Classification and identification of bacteria by mass spectrometry and computational analysis

21 June 2018

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The bacterial type VI secretion machine: yet another player for protein transport across membranes

21 June 2018

1 reference

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The genome of Erwinia tasmaniensis strain Et1/99, a non-pathogenic bacterium in the genus Erwinia.

21 June 2018

1 reference

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Viewing and editing assembled sequences using Consed

21 June 2018

1 reference

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Evolution of the type III secretion system and its effectors in plant-microbe interactions

21 June 2018

1 reference

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Crystal structure of SopA, a Salmonella effector protein mimicking a eukaryotic ubiquitin ligase

21 June 2018

1 reference

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Type III secretion systems and disease

21 June 2018

1 reference

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Roles of curli, cellulose and BapA in Salmonella biofilm morphology studied by atomic force microscopy

21 June 2018

1 reference

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Rcs and PhoPQ regulatory overlap in the control of Salmonella enterica virulence

21 June 2018

1 reference

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RNAmmer: consistent and rapid annotation of ribosomal RNA genes

21 June 2018

1 reference

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Erwinia tasmaniensis sp. nov., a non-phytopathogenic bacterium from apple and pear trees

21 June 2018

1 reference

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Comparative genomics reveals what makes an enterobacterial plant pathogen

21 June 2018

1 reference

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Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Characterization of hns genes from Erwinia amylovora

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Molecular genetics of Erwinia amylovora involved in the development of fire blight

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs)

21 June 2018

1 reference

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The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Genome sequence of the chlorinated compound–respiring bacterium Dehalococcoides species strain CBDB1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

ACT: the Artemis Comparison Tool

21 June 2018

1 reference

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Type V protein secretion pathway: the autotransporter story

21 June 2018

1 reference

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Degenerative evolution and functional diversification of type-III secretion systems in the insect endosymbiont Sodalis glossinidius

21 June 2018

1 reference

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Evolutionary and functional relationships of colonization factor antigen i and other class 5 adhesive fimbriae of enterotoxigenic Escherichia coli

21 June 2018

1 reference

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Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors.

21 June 2018

1 reference

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Mauve: multiple alignment of conserved genomic sequence with rearrangements

21 June 2018

1 reference

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Hijacking Rho GTPases by protein toxins and apoptosis: molecular strategies of pathogenic bacteria.

21 June 2018

1 reference

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virK, somA and rcsC are important for systemic Salmonella enterica serovar Typhimurium infection and cationic peptide resistance

21 June 2018

1 reference

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Genes involved in the anaerobic degradation of ethylbenzene in a denitrifying bacterium, strain EbN1

21 June 2018

1 reference

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Antibiotic use in plant agriculture

21 June 2018

1 reference

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IpaC from Shigella and SipC from Salmonella possess similar biochemical properties but are functionally distinct

21 June 2018

1 reference

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Mutation of the gene encoding cytotoxic necrotizing factor type 1 (cnf(1)) attenuates the virulence of uropathogenic Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

The secreted effector protein of Salmonella dublin, SopA, is translocated into eukaryotic cells and influences the induction of enteritis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Artemis: sequence visualization and annotation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Escherichia coli cytotoxic necrotizing factor-1 (CNF-1) increases the adherence to epithelia and the oxidative burst of human polymorphonuclear leukocytes but decreases bacteria phagocytosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

The osmolyte xylitol reduces the salt concentration of airway surface liquid and may enhance bacterial killing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Molecular analysis of sucrose metabolism of Erwinia amylovora and influence on bacterial virulence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

A whole-genome assembly of Drosophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Improved microbial gene identification with GLIMMER

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Pseudomonas syringae phytotoxins: mode of action, regulation, and biosynthesis by peptide and polyketide synthetases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Erwinia pyrifoliae sp. nov., a novel pathogen that affects Asian pear trees (Pyrus pyrifolia Nakai)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Reclassification of non-pigmented Erwinia herbicola strains from trees as Erwinia billingiae sp. nov.

21 June 2018

1 reference

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Bacterial toxins and the Rho GTP-binding protein: what microbes teach us about cell regulation

21 June 2018

1 reference

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A family of stability determinants in pathogenic bacteria

21 June 2018

1 reference

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Dual role of desferrioxamine in Erwinia amylovora pathogenicity

21 June 2018

1 reference

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Type III protein secretion systems in bacterial pathogens of animals and plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Genetics of sorbitol metabolism in Erwinia amylovora and its influence on bacterial virulence

21 June 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

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Non-invasive Salmonella typhimurium mutants are avirulent because of an inability to enter and destroy M cells of ileal Peyer's patches

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

The complex bet promoters of Escherichia coli: regulation by oxygen (ArcA), choline (BetI), and osmotic stress

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

A workbench for large-scale sequence homology analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Functional analysis of the Salmonella typhimurium invasion genes invl and invJ and identification of a target of the protein secretion apparatus encoded in the inv locus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Purification and characterization of the Bacillus subtilis levanase produced in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Molecular analysis of the ams operon required for exopolysaccharide synthesis of Erwinia amylovora

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

The multifunctional peptide synthetase performing the first step of penicillin biosynthesis in Penicillium chrysogenum is a 421,073 dalton protein similar to Bacillus brevis peptide antibiotic synthetases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Identification of minor fimbrial subunits involved in biosynthesis of K88 fimbriae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Localization of transposon insertions in pathogenicity mutants of Erwinia amylovora and their biochemical characterization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Construction and analysis of pathogenicity island deletion mutants of Erwinia amylovora

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

A polyphasic approach assigns the pathogenic Erwinia strains from diseased pear trees in Japan to Erwinia pyrifoliae

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Genetic Analysis of a Pathogenic Erwinia sp. Isolated from Pear in Japan.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Genetic organization of the hrp genes cluster in Erwinia pyrifoliae and characterization of HR active domains in HrpNEp protein by mutational analysis.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Regulation of type 1 fimbriae synthesis and biofilm formation by the transcriptional regulator LrhA of Escherichia coli.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Genetics of biosynthesis and structure of the capsular exopolysaccharide from the Asian pear pathogen Erwinia pyrifoliae

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Molecular characterization of a protease secreted by Erwinia amylovora

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Homologous recombination between rrn operons rearranges the chromosome in host-specialized species of Salmonella.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2897811

Fimbrial expression in enteric bacteria: a critical step in intestinal pathogenesis

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20565991

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20565991

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-11-393

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20565991%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

6 February 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-393

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20565991%20AND%20SRC:MED&resulttype=core&format=json

6 February 2020

PubMed publication ID

20565991

1 reference