Assessment and integration of publicly available SAGE, cDNA microarray, and oligonucleotide microarray expression data for global coexpression analyses. (Q30999749)

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English	Assessment and integration of publicly available SAGE, cDNA microarray, and oligonucleotide microarray expression data for global coexpression analyses.	scientific article

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5 January 2020

Assessment and integration of publicly available SAGE, cDNA microarray, and oligonucleotide microarray expression data for global coexpression analyses (English)

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Erin D Pleasance

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Debra L Fulton

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Mehrdad Oveisi

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Martin Ester

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Asim S Siddiqui

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1 October 2005

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5 January 2020

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

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Expression monitoring by hybridization to high-density oligonucleotide arrays

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Serial analysis of gene expression

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MicroSAGE is highly representative and reproducible but reveals major differences in gene expression among samples obtained from similar tissues

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Are data from different gene expression microarray platforms comparable?

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Comparison of oligonucleotide-microarray and serial analysis of gene expression (SAGE) in transcript profiling analysis of megakaryocytes derived from CD34+ cells

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Differential gene expression patterns revealed by oligonucleotide versus long cDNA arrays

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A comparison of gene expression profiles produced by SAGE, long SAGE, and oligonucleotide chips

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Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells

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Quantifying the relationship between co-expression, co-regulation and gene function

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A gene expression map for Caenorhabditis elegans.

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Regulatory networks revealed by transcriptional profiling of damaged Saccharomyces cerevisiae cells: Rpn4 links base excision repair with proteasomes

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Genomics. Microarrays--guilt by association

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Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements

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Systematic variation in gene expression patterns in human cancer cell lines

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Coexpression analysis of human genes across many microarray data sets

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From co-expression to co-regulation: how many microarray experiments do we need?

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Limited agreement among three global gene expression methods highlights the requirement for non-global validation.

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