Ensemble versus single-molecule protein unfolding (Q31004121)

13 October 2017

Ensemble versus single-molecule protein unfolding (English)

1 reference

13 October 2017

2

Valerie Daggett

1 reference

13 October 2017

Ryan Day

1

1 reference

PMC publication ID

1224615

13 October 2017

language of work or name

English

0 references

publication date

9 September 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

13 October 2017

1 reference

13 October 2017

102

1 reference

13 October 2017

38

1 reference

13 October 2017

13445-13450

1 reference

Phi-value analysis by molecular dynamics simulations of reversible folding

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

21 June 2018

Single-molecule folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

Molecular dynamics simulations of the protein unfolding/folding reaction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

Protein folding from a highly disordered denatured state: the folding pathway of chymotrypsin inhibitor 2 at atomic resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

Single-molecule protein folding: diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

Hierarchy of structure loss in MD simulations of src SH3 domain unfolding.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

Synergy between simulation and experiment in describing the energy landscape of protein folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

"New view" of protein folding reconciled with the old through multiple unfolding simulations.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

Characterization of the transition state of protein unfolding by use of molecular dynamics: chymotrypsin inhibitor 2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

Structure of the transition state for the folding/unfolding of the barley chymotrypsin inhibitor 2 and its implications for mechanisms of protein folding.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

Funnels, pathways, and the energy landscape of protein folding: a synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

Refinement of the three-dimensional solution structure of barley serine proteinase inhibitor 2 and comparison with the structures in crystals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1224615

Increasing temperature accelerates protein unfolding without changing the pathway of unfolding

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501773102

Sensitivity of the folding/unfolding transition state ensemble of chymotrypsin inhibitor 2 to changes in temperature and solvent

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501773102

Structure of the transition state for folding of a protein derived from experiment and simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501773102

Direct comparison of experimental and calculated folding free energies for hydrophobic deletion mutants of chymotrypsin inhibitor 2: free energy perturbation calculations using transition and denatured states from molecular dynamics simulations of u

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501773102

Probing the energy landscape of protein folding/unfolding transition states

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501773102

Assessing equilibration and convergence in biomolecular simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501773102

Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501773102

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501773102

Calculations on folding of segment B1 of streptococcal protein G

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16155127

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0501773102

1 reference

13 October 2017

0 references

1 reference

PMC publication ID

1224615

13 October 2017

PubMed publication ID

16155127

1 reference

PMC publication ID

1224615